Escherichia coli AVS0935 |
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Putative Escherichia coli AVS0935 RM systems
Ref: Biggel,M. unpublished
REBASE ref # 31800
| Sequence length: | GenBank #: | |
| Chromosome: | 4,917,286 bp | CP124405 |
| plasmid pAVS0935-A: | 91,501 bp | CP124406 |
| plasmid pAVS0935-B: | 74,054 bp | CP124407 |
REBASE acronym: EcoS0935
Org_num: 67318
All begin QJB05_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 14570 | helix-turn-helix domain-containing protein | |||
| 14575 | M | M.Pre393ORF2750P (100% identity) | M.EcoS0935ORF14575P | |
| 14580 | S | S.EcotcmA3ORF16550P (100% identity) | S.EcoS0935ORF14575P | |
| 14585 | RecQ family ATP-dependent DNA helicase | |||
| 14590 | IS3-like element ISEc52 family transposase | |||
| 14595 | phosphoribosyltransferase family protein | |||
| 14600 | DNA-processing protein DprA | |||
| 14605 | R | EcotcmA3ORF16550P (100% identity) | EcoS0935ORF14575P | |
| 14610 | IS3-like element ISSen4 family transposase | |||
| 16475 | endoribonuclease SymE | |||
| 16480 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | EcoS0935ORF16490P |
| 16485 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcoS0935ORF16490P |
| 16490 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.EcoS0935ORF16490P |
| 16495 | restriction endonuclease | |||
| 18315 | ash family protein | |||
| 18320 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoS0935ORF18325P |
| 18325 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoS0935ORF18325P |
| 18330 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoS0935ORF18325P |
| 18335 | type IV toxin-antitoxin system AbiEi family | |||
| plasmid pAVS0935-A | ||||
| 24360 | IS1-like element IS1A family transposase | |||
| 24365 | R | KpnKPH1ORF27575P (100% identity) | CAAYNNNNNCTGG | EcoS0935ORF24375P |
| 24370 | S | S.SenBR076ORFFP (100% identity) | CAAYNNNNNCTGG | S1.EcoS0935ORF24375P |
| 24375 | M | M.SenceORFJP (99% identity) | CAAYNNNNNCTGG | M.EcoS0935ORF24375P |
| 24380 | type II toxin-antitoxin system Phd/YefM family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3480 | drug/metabolite exporter YedA | |||
| 3485 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcoS0935DcmP |
| 3490 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoS0935DcmP |
| 3495 | phosphohydrolase | |||
| 10215 | DNA-binding transcriptional regulator Fis | |||
| 10220 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoS0935ORF10220P |
| 10225 | DUF2556 family protein | |||
| 10825 | ribulose-phosphate 3-epimerase | |||
| 10830 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoS0935DamP |
| 10835 | cell division protein DamX | |||
| 16120 | helix-turn-helix domain-containing protein | |||
| 16125 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoS0935ORF16125P |
| 16130 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoS0935ORF16125P |
| 16135 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoS0935ORF16125P |
| 16140 | McrC family protein | |||
| 21490 | 71 aa hypothetical protein | |||
| 21495 | M | M.KpnYN1ORFGP (89% identity) | M.EcoS0935ORF21495P | |
| 21500 | helix-turn-helix transcriptional regulator | |||
| 23790 | TrmB family transcriptional regulator | |||
| 23795 | M | M.EcosS9ORF10680P (100% identity) | A | M.EcoS0935ORF23795P |
| 23810 | DUF3927 family protein | |||
| plasmid pAVS0935-A | ||||
| 24300 | 73 aa hypothetical protein | |||
| 24305 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoS0935ORF24305P |
| 24310 | 103 aa hypothetical protein | |||
| plasmid pAVS0935-B | ||||
| 24545 | 103 aa hypothetical protein | |||
| 24550 | M | M.Sfl0030ORFCP (100% identity) | SAY | M.EcoS0935ORF24550P |
| 24555 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 16135 | Alw26I/Eco31I/Esp3I family type II restriction | |||
| 16140 | R | EcosS9McrCP (100% identity) | EcoS0935McrCP | |
| 16145 | R | EcosS3McrBP (100% identity) | EcoS0935McrBP | |
| 16150 | glycosyltransferase | |||