Escherichia coli YP3 |
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Putative Escherichia coli YP3 RM systems
Ref: Ramachandra,D.C. et al. unpublished
REBASE ref # 36778
Complete sequence: 5,085,570 bp
GenBank #: CP072687
REBASE acronym: EcoYP3
Org_num: 67418
All begin J8I95_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 20125 | restriction endonuclease | |||
| 20130 | M | M.Ecost88ORF20845P (99% identity) | GGYANNNNNGTNG | M.EcoYP3ORF20130P |
| 20135 | S | S.Ecost88ORF20845P (100% identity) | GGYANNNNNGTNG | S.EcoYP3ORF20130P |
| 20140 | R | Ecost88ORF20845P (100% identity) | GGYANNNNNGTNG | EcoYP3ORF20130P |
| 20145 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 520 | integrase | |||
| 525 | M | M.SflFF80ORF21000P (100% identity) | YGGCCR | M.EcoYP3ORF525P |
| 530 | R | SflFF80ORF21000P (100% identity) | YGGCCR | EcoYP3ORF525P |
| 535 | transposase | |||
| 2035 | cell division protein DamX | |||
| 2040 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoYP3DamP |
| 2045 | ribulose-phosphate 3-epimerase | |||
| 2635 | DUF2556 family protein | |||
| 2640 | M | M.Ecos19ORF2295P (100% identity) | ATGCAT | M.EcoYP3ORF2640P |
| 2645 | DNA-binding transcriptional regulator Fis | |||
| 9790 | phosphohydrolase | |||
| 9795 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoYP3DcmP |
| 9800 | V | V.EcoUPEC132DcmP (74% identity) | V.EcoYP3DcmP | |
| 9805 | drug/metabolite exporter YedA | |||
| 16065 | protein ninF | |||
| 16070 | M | M.EcoK5643ORF16330P (95% identity) | M.EcoYP3ORF16070P | |
| 16075 | NinE family protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 20120 | BrnT family toxin | |||
| 20125 | R | Ecost88MrrP (100% identity) | EcoYP3MrrP | |
| 20130 | type I restriction-modification system subunit | |||