Paracoccus ferrooxidans NCCB 100066 |
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Putative Paracoccus ferrooxidans NCCB 100066 RM systems
Ref: Lasek,R. and Bartosik,D. unpublished
REBASE ref # 36369
| Sequence length: | GenBank #: | |
| Chromosome: | 2,528,920 bp | CP038198 |
| plasmid pFER2: | 50,343 bp | CP038200 |
| plasmid pFER4: | 1,464,534 bp | CP038202 |
REBASE acronym: Pfe100066
Org_num: 67054
All begin E3U26_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3730 | 128 aa hypothetical protein | |||
| 3735 | S | S2.Pgi3ORF3751P (99% identity) | S1.Pfe100066ORF3740P | |
| 3740 | M | M.PdeOD1ORFCP (77% identity) | M.Pfe100066ORF3740P | |
| 3745 | hydroxyacid dehydrogenase | |||
| 3750 | S | S.MroGW6I (61% identity) | S2.Pfe100066ORF3740P | |
| 3755 | DUF2188 domain-containing protein | |||
| 3760 | DUF4917 family protein | |||
| 3765 | R | PdeOD1ORFCP (96% identity) | Pfe100066ORF3740P | |
| 3770 | M48 family peptidase | |||
| plasmid pFER4 | ||||
| 20640 | M48 family peptidase | |||
| 20645 | R | RetCIP (86% identity) | Pfe100066ORF20645P | |
| 20650 | S | S.Zmo1960ORF9105P (48% identity) | S.Pfe100066ORF20645P | |
| 20655 | IS3-like element ISPfe1 family transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3310 | 69 aa hypothetical protein | |||
| 3315 | M | M.Pko0001ORF8220P (95% identity) | M.Pfe100066ORF3315P | |
| 3320 | HNH endonuclease | |||
| 3610 | 209 aa hypothetical protein | |||
| 3615 | M | M.PspOMORF1815P (94% identity) | M.Pfe100066ORF3615P | |
| 3620 | 141 aa hypothetical protein | |||
| 4615 | alkane 1-monooxygenase | |||
| 4620 | M | M.Pve17099ORF15980P (100% identity) | M.Pfe100066ORF4620P | |
| 4625 | ribonuclease HII | |||
| plasmid pFER2 | ||||
| 12895 | 238 aa hypothetical protein | |||
| 12900 | RM | Rsp34AORF19595P (73% identity) | Pfe100066ORF12900P | |
| 12905 | 64 aa hypothetical protein | |||
| 12955 | single-stranded DNA-binding protein | |||
| 12960 | RM | LveSMR4rORF3383P (74% identity) | Pfe100066ORF12960P | |
| 12965 | 61 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 11855 | ATP-binding protein | |||
| 11860 | R | YspBS53ORF10200P (83% identity) | Pfe100066ORF11865P | |
| 11865 | M | M.TaeAL3ORF9660P (58% identity) | M.Pfe100066ORF11865P | |
| 11870 | XRE family transcriptional regulator | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3425 | DEAD/DEAH box helicase | |||
| 3430 | R | Pam7685McrCP (95% identity) | Pfe100066McrCP | |
| 3435 | R | Ppa2944McrBP (61% identity) | Pfe100066McrBP | |
| 3440 | TM0106 family RecB-like putative nuclease | |||