Escherichia coli 4588 |
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Putative Escherichia coli 4588 RM systems
Ref: Shropshire,W.C. et al. unpublished
REBASE ref # 36584
| Sequence length: | GenBank #: | |
| Chromosome: | 4,745,987 bp | CP123237 |
| plasmid pMB7355_2: | 81,424 bp | CP123239 |
REBASE acronym: Eco4588
Org_num: 66693
All begin QET42_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 9710 | IS1-like element IS1A family transposase | |||
| 9715 | R | EcosNDM5ORF9185P (99% identity) | Eco4588ORF9715P | |
| 9720 | SprT family zinc-dependent metalloprotease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1660 | cell division protein DamX | |||
| 1665 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco4588DamP |
| 1670 | ribulose-phosphate 3-epimerase | |||
| 2290 | DUF2556 family protein | |||
| 2295 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.Eco4588ORF2295P |
| 2300 | DNA-binding transcriptional regulator Fis | |||
| 6000 | phage lysis protein EssD | |||
| 6005 | M | M.Sso63633ORF22290P (100% identity) | M.Eco4588ORF6005P | |
| 6010 | 67 aa hypothetical protein | |||
| 7085 | recombination protein NinB | |||
| 7090 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.Eco4588ORF7090P |
| 7095 | NinE family protein | |||
| 9410 | phosphohydrolase | |||
| 9415 | M | M.SspS13DcmP (100% identity) | CCWGG | M.Eco4588DcmP |
| 9420 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.Eco4588DcmP |
| 9425 | drug/metabolite exporter YedA | |||
| 11460 | DUF977 family protein | |||
| 11465 | M | M.SsoSE61ORF20220P (100% identity) | M.Eco4588ORF11465P | |
| 11470 | IS66-like element ISEc22 family transposase | |||
| 15350 | replication endonuclease | |||
| 15355 | M | M.SflN92ORF14970P (100% identity) | GATC | M.Eco4588ORF15355P |
| 15360 | TraR/DksA family transcriptional regulator | |||
| plasmid pMB7355_2 | ||||
| 24150 | 101 aa hypothetical protein | |||
| 24155 | M | M.SflP099ORF24775P (100% identity) | M.Eco4588ORF24155P | |
| 24160 | 73 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 9215 | SpnT protein | |||
| 9220 | M | M.KpnNf13ORF21775P (98% identity) | CCGAG | M.Eco4588ORF9220P |
| 9225 | R | SenMAC15ORF10230P (98% identity) | CCGAG | Eco4588ORF9220P |
| 9230 | shufflon system plasmid conjugative transfer | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20030 | HNH endonuclease | |||
| 20035 | R | SflSTLE4McrCP (100% identity) | Eco4588McrCP | |
| 20040 | R | SflSTLE4McrBP (100% identity) | Eco4588McrBP | |
| 20045 | DUF4942 domain-containing protein | |||