Salmonella enterica S9_VPH_Chula |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Salmonella enterica S9_VPH_Chula RM systems
Ref: Kiatyingangsulee,T. and Chuanchuen,R. unpublished
REBASE ref # 36628
| Sequence length: | GenBank #: | |
| Chromosome: | 4,811,445 bp | CP121398 |
| plasmid unnamed1: | 296,406 bp | CP121399 |
REBASE acronym: SenS9
Org_num: 66830
All begin QAT94_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19710 | 322 aa hypothetical protein | |||
| 19715 | R | SspA292ORF20040P (100% identity) | GAYANNNNNNNNGTGG | SenS9ORF19720P |
| 19720 | M | M.SspA292ORF20040P (100% identity) | GAYANNNNNNNNGTGG | M.SenS9ORF19720P |
| 19725 | S | S.SspA292ORF20040P (100% identity) | GAYANNNNNNNNGTGG | S.SenS9ORF19720P |
| 19730 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2265 | DUF2556 family protein | |||
| 2270 | M | M.StyUK1III (100% identity) | ATGCAT | M.SenS9ORF2270P |
| 2275 | tyrosine-type recombinase/integrase | |||
| 3270 | DUF2732 family protein | |||
| 3275 | M | M.SenUA39ORF1528P (100% identity) | GATC | M.SenS9ORF3275P |
| 3280 | replication endonuclease | |||
| 7185 | NinE family protein | |||
| 7190 | M | M.SspA292ORF7010P (100% identity) | M.SenS9ORF7190P | |
| 7195 | protein NinF | |||
| 9505 | phosphohydrolase | |||
| 9510 | M | M.SspZ54DcmP (100% identity) | CCWGG | M.SenS9DcmP |
| 9515 | V | V.StyUK1DcmP (100% identity) | CCWGG | V.SenS9DcmP |
| 9520 | drug/metabolite exporter YedA | |||
| 19850 | YebC/PmpR family DNA-binding transcriptional | |||
| 19855 | R | SspA292ORF20185P (100% identity) | SenS9ORF19855P | |
| 19860 | malate transporter | |||
| 19880 | BREX system P-loop protein BrxC | |||
| 19885 | RM | SspA292ORF20215P (100% identity) | GAANCAG | SenS9ORF19885P |
| 19890 | AAA family ATPase | |||
| plasmid unnamed1 | ||||
| 24210 | 55 aa hypothetical protein | |||
| 24215 | M | M.YpsF1ORFCP (100% identity) | CCWGG | M.SenS9ORF24215P |
| 24220 | thermonuclease family protein | |||
| 24620 | IS5 family transposase | |||
| 24625 | M | M.YpsF1ORFBP (100% identity) | M.SenS9ORF24625P | |
| 24630 | 202 aa hypothetical protein | |||
| 24755 | DNA-binding protein | |||
| 24760 | M | M.YpsF1ORFDP (100% identity) | GATC | M.SenS9ORF24760P |
| 24765 | 284 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 17340 | small effector SsaA | |||
| 17345 | R | SspA292ORF17210P (100% identity) | CAGAG | SenS9ORF17350P |
| 17350 | M | M.SspA292ORF17210P (100% identity) | CAGAG | M.SenS9ORF17350P |
| 17355 | MFS transporter | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19910 | phospholipase D-like domain-containing protein | |||
| 19915 | R | SenTY27MrrP (100% identity) | SenS9MrrP | |
| 19920 | AAA domain-containing protein | |||