Streptococcus suis SS/UPM/MY/F001 |
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Putative Streptococcus suis SS/UPM/MY/F001 RM systems
Ref: Lee,C.Y. et al. unpublished
REBASE ref # 36655
Complete sequence: 2,470,830 bp
GenBank #: CP116393
REBASE acronym: SsuF001
Org_num: 66952
All begin PFZ59_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4155 | DUF1372 family protein | |||
| 4160 | M | M.SsuS11ORF4005P (89% identity) | M.SsuF001ORF4160P | |
| 4165 | restriction endonuclease subunit S | |||
| 8630 | peptidoglycan recognition family protein | |||
| 8635 | R | SsuDNS20ORF3000P (90% identity) | SsuF001ORF8640P | |
| 8640 | M | M.SsuDNS20ORF3000P (98% identity) | M.SsuF001ORF8640P | |
| 8645 | S | S.Shy12224ORF875P (45% identity) | S.SsuF001ORF8640P | |
| 8650 | DUF6261 family protein | |||
| 11085 | 63 aa hypothetical protein | |||
| 11090 | M | M.SsuF001ORF4160P (83% identity) | M.SsuF001ORF11090P | |
| 11095 | DUF1372 family protein | |||
| 12025 | 253 aa hypothetical protein | |||
| 12030 | S | S.SsuLS9NORFKP (36% identity) | S3.SsuF001ORF12060P | |
| 12035 | tyrosine-type recombinase/integrase | |||
| 12040 | S | S2.SpaSUT7ORF16450P (97% identity) | S2.SsuF001ORF12060P | |
| 12045 | R | Ssu1112SORF2965P (97% identity) | SsuF001ORF12060P | |
| 12050 | S | S1.SpaSFJ45ORF7850P (62% identity) | S1.SsuF001ORF12060P | |
| 12055 | 44 aa hypothetical protein | |||
| 12060 | M | M.Ssu2ORF3230P (98% identity) | M.SsuF001ORF12060P | |
| 12065 | DUF6261 family protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 8235 | XRE family transcriptional regulator | |||
| 8240 | M | M2.Sdy2713ORF1407P (98% identity) | M1.SsuF001ORF8240P | |
| 8245 | M | M1.Sdy2713ORF1407P (100% identity) | GACGC | M2.SsuF001ORF8240P |
| 8250 | R | R2.Sdy2713ORF1405P (99% identity) | GACGC | R1.SsuF001ORF8240P |
| 8255 | R | R1.Sdy2713ORF1405P (99% identity) | R2.SsuF001ORF8240P | |
| 8260 | 384 aa hypothetical protein | |||
| 8330 | helix-turn-helix domain-containing protein | |||
| 8335 | M | M2.Ssu12RC1ORF5970P (98% identity) | M1.SsuF001ORF8335P | |
| 8340 | M | M.SsucFJSM5ORF3055P (98% identity) | M2.SsuF001ORF8335P | |
| 8345 | 82 aa hypothetical protein | |||
| 9340 | site-specific integrase | |||
| 9345 | M | M.SeqZH70ORF9640P (77% identity) | M.SsuF001ORF9345P | |
| 9350 | RM | SeqZH70ORF9630P (88% identity) | SsuF001ORF9345P | |
| 9355 | 55 aa hypothetical protein | |||
| 10680 | HaeIII family restriction endonuclease | |||
| 10685 | M | M.Ssu39565ORF3945P (98% identity) | M.SsuF001ORF10685P | |
| 10690 | ABC transporter ATP-binding protein | |||
| 12440 | MmcQ/YjbR family DNA-binding protein | |||
| 12445 | R | Ssu1003ORF2415P (97% identity) | SsuF001ORF12450P | |
| 12450 | M | M.Ssu1003ORF2415P (98% identity) | M.SsuF001ORF12450P | |
| 12455 | IS5 family transposase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 7475 | holin-like toxin | |||
| 7480 | M | M.Ssu48ORF4090P (69% identity) | M.SsuF001ORF7480P | |
| 7485 | 170 aa hypothetical protein | |||
| 7490 | R | Ssu1081ORF7070P (94% identity) | SsuF001ORF7480P | |
| 7495 | 249 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 9430 | helix-turn-helix transcriptional regulator | |||
| 9435 | R | SsuSS389McrCP (98% identity) | SsuF001McrCP | |
| 9440 | R | SsuSS389McrBP (97% identity) | SsuF001McrBP | |
| 9445 | 262 aa hypothetical protein | |||