Clostridium perfringens D CN3842 |
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Putative Clostridium perfringens D CN3842 RM systems
Ref: Ma,Y. et al. J Clin Invest (2023) In press
REBASE ref # 36450
| Sequence length: | GenBank #: | |
| Chromosome: | 3,441,268 bp | CP116428 |
| plasmid pCN3842etx: | 83,502 bp | CP116429 |
REBASE acronym: Cpe3842
Org_num: 66048
All begin PL327_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 8545 | SH3 domain-containing protein | |||
| 8550 | R | Csp1R1ORF7295P (100% identity) | Cpe3842ORF8560P | |
| 8555 | S | S.Cpe186ORF7255P (100% identity) | S.Cpe3842ORF8560P | |
| 8560 | M | M.Cpe186ORF7255P (99% identity) | M.Cpe3842ORF8560P | |
| 8565 | 59 aa hypothetical protein | |||
| 14005 | SprT family zinc-dependent metalloprotease | |||
| 14010 | R | CpeAIP (98% identity) | Cpe3842ORF14030P | |
| 14015 | deoxycytidine deaminase | |||
| 14020 | FRG domain-containing protein | |||
| 14025 | S | S.CpeJP55ORF3230P (65% identity) | S.Cpe3842ORF14030P | |
| 14030 | M | M.Cpe5ORF8995P (98% identity) | M.Cpe3842ORF14030P | |
| 14035 | 357 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2580 | 96 aa hypothetical protein | |||
| 2585 | M | M.Cpe13ORF7320P (99% identity) | M.Cpe3842ORF2585P | |
| 2590 | 60 aa hypothetical protein | |||
| 9060 | helix-turn-helix transcriptional regulator | |||
| 9065 | R | CpeC216ORF7275P (100% identity) | CCWGG | Cpe3842ORF9070P |
| 9070 | M | M.Cpe10578IV (100% identity) | CCWGG | M.Cpe3842ORF9070P |
| 9075 | IS200/IS605 family transposase | |||
| 15735 | peptide-methionine (S)-S-oxide reductase MsrA | |||
| 15740 | M | M.CpeN11ORF460P (100% identity) | GTATAC | M.Cpe3842ORF15740P |
| 15745 | YhgE/Pip domain-containing protein | |||
| plasmid pCN3842etx | ||||
| 16250 | 101 aa hypothetical protein | |||
| 16255 | M | M.Cpe1142ORFBP (91% identity) | M.Cpe3842ORF16255P | |
| 16260 | 57 aa hypothetical protein | |||
| 16500 | DUF4236 domain-containing protein | |||
| 16155 | M | M.Cpe838ORF4P (98% identity) | M.Cpe3842ORF16155P | |
| 16160 | 94 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5600 | 118 aa hypothetical protein | |||
| 5605 | R | Cpe83McrBP (100% identity) | Cpe3842McrBP | |
| 5610 | R | CpeDel1McrCP (100% identity) | Cpe3842McrCP | |
| 5615 | SdpI family protein | |||
| 5710 | ribosomal protein L7/L12 | |||
| 5715 | R | Cpe49786ORF4345P (98% identity) | Cpe3842ORF5715P | |
| 5720 | DUF262 domain-containing HNH endonuclease family | |||