Clostridium perfringens D NCTC8346 |
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Putative Clostridium perfringens D NCTC8346 RM systems
Ref: Ma,Y. et al. J Clin Invest (2023) In press
REBASE ref # 36450
| Sequence length: | GenBank #: | |
| Chromosome: | 3,493,017 bp | CP116430 |
| plasmid pNCTC8346etx: | 54,591 bp | CP116431 |
REBASE acronym: Cpe8346
Org_num: 66050
All begin PL323_
| Type II | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5510 | 217 aa hypothetical protein | |||
| 5515 | M | M.Cpe42ORF4780P (96% identity) | M.Cpe8346ORF5515P | |
| 5520 | DUF4065 domain-containing protein | |||
| 8430 | SH3 domain-containing protein | |||
| 8435 | M | M.CpeC269DndBP (100% identity) | M.Cpe8346DndBP | |
| 8440 | DNA phosphorothioation system sulfurtransferase | |||
| 8435 | DNA sulfur modification protein DndB | |||
| 8440 | M | M.CpeC269DndCP (99% identity) | M.Cpe8346DndCP | |
| 8445 | DNA sulfur modification protein DndD | |||
| 8440 | DNA phosphorothioation system sulfurtransferase | |||
| 8445 | M | M.CpeN11DndDP (98% identity) | M.Cpe8346DndDP | |
| 8450 | DndE family protein | |||
| 8445 | DNA sulfur modification protein DndD | |||
| 8450 | M | M.CpeN11DndEP (100% identity) | M.Cpe8346DndEP | |
| 8455 | cysteine desulfurase family protein | |||
| 8450 | DndE family protein | |||
| 8455 | M | M.CpeN11DndAP (97% identity) | M.Cpe8346DndAP | |
| 8460 | 420 aa hypothetical protein | |||
| 8465 | DGQHR domain-containing protein | |||
| 8470 | R | Cpe211DptHP (98% identity) | Cpe8346DptHP | |
| 8475 | DNA phosphorothioation-dependent restriction | |||
| 8470 | DNA phosphorothioation-dependent restriction | |||
| 8475 | R | CpeC269DptGP (100% identity) | Cpe8346DptGP | |
| 8480 | DNA phosphorothioation-dependent restriction | |||
| 8475 | DNA phosphorothioation-dependent restriction | |||
| 8480 | R | Cpe65DptFP (98% identity) | Cpe8346DptFP | |
| 8485 | cell envelope integrity protein TolA | |||
| 12835 | phospholipase D-like domain-containing protein | |||
| 12840 | M | M.Cpe53ORF735P (67% identity) | M.Cpe8346ORF12840P | |
| 12845 | DUF3780 domain-containing protein | |||
| 15670 | peptide-methionine (S)-S-oxide reductase MsrA | |||
| 15675 | M | M.CpeAVI (99% identity) | GTATAC | M.Cpe8346ORF15675P |
| 15680 | YhgE/Pip domain-containing protein | |||
| 15785 | 112 aa hypothetical protein | |||
| 15790 | RM | Csp10701ORF18020P (80% identity) | Cpe8346ORF15795P | |
| 15795 | M | M.Csp10701ORF18020P (83% identity) | M.Cpe8346ORF15795P | |
| 15800 | zinc-ribbon domain-containing protein | |||
| plasmid pNCTC8346etx | ||||
| 16250 | 101 aa hypothetical protein | |||
| 16255 | M | M.CpeFU17ORF16140P (100% identity) | M.Cpe8346ORF16255P | |
| 16260 | 57 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5585 | 103 aa hypothetical protein | |||
| 5590 | R | Cpe2aMcrB2P (98% identity) | Cpe8346McrBP | |
| 5595 | R | Cpe7757AMcrCP (99% identity) | Cpe8346McrCP | |
| 5600 | SdpI family protein | |||
| 5715 | ribosomal protein L7/L12 | |||
| 5720 | R | Cpe181bORF5095P (99% identity) | Cpe8346ORF5720P | |
| 5725 | DGQHR domain-containing protein | |||