Clostridium perfringens D SHDS0050 |
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Putative Clostridium perfringens D SHDS0050 RM systems
Ref: Ma,Y. et al. J Clin Invest (2023) In press
REBASE ref # 36450
| Sequence length: | GenBank #: | |
| Chromosome: | 3,351,893 bp | CP116434 |
| plasmid pSHDS0050etx: | 54,591 bp | CP116435 |
REBASE acronym: Cpe0050
Org_num: 66051
All begin PL326_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5425 | NERD domain-containing protein | |||
| 5430 | M | M1.Cpe05ORF4500P (97% identity) | M.Cpe0050ORF5430P | |
| 5435 | 192 aa hypothetical protein | |||
| 5445 | TIGR04141 family sporadically distributed | |||
| 5450 | M | M.Cpe19ORFAP (95% identity) | M.Cpe0050ORF5450P | |
| 5455 | S | S.Cpe19ORFAP (64% identity) | S.Cpe0050ORF5450P | |
| 5460 | 404 aa hypothetical protein | |||
| 5465 | R | Cpe19ORFAP (98% identity) | Cpe0050ORF5450P | |
| 5470 | 330 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 15190 | peptide-methionine (S)-S-oxide reductase MsrA | |||
| 15195 | M | M.CpeS10ORF14490P (100% identity) | GTATAC | M.Cpe0050ORF15195P |
| 15200 | YhgE/Pip domain-containing protein | |||
| plasmid pSHDS0050etx | ||||
| 15705 | 101 aa hypothetical protein | |||
| 15710 | M | M.CpeFU17ORF16140P (100% identity) | M.Cpe0050ORF15710P | |
| 15715 | 57 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2235 | DUF4391 domain-containing protein | |||
| 2240 | M | M.CpeC216ORF1965P (100% identity) | M.Cpe0050ORF2240P | |
| 2245 | R | CpeC216ORF1965P (100% identity) | Cpe0050ORF2240P | |
| 2250 | 72 aa hypothetical protein | |||
| 2350 | serine/threonine-protein kinase | |||
| 2355 | M | M.CspJN9ORF3040P (66% identity) | M.Cpe0050ORF2355P | |
| 2360 | R | Cpe181bORF2035P (99% identity) | Cpe0050ORF2355P | |
| 2365 | 183 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5265 | 108 aa hypothetical protein | |||
| 5270 | R | CpeP201McrBP (97% identity) | Cpe0050McrBP | |
| 5275 | R | Cpe7757AMcrCP (96% identity) | Cpe0050McrCP | |
| 5280 | SdpI family protein | |||
| 5385 | ribosomal protein L7/L12 | |||
| 5390 | R | Cpe3182ORF3298P (98% identity) | Cpe0050ORF5390P | |
| 5395 | ATP-dependent helicase | |||