Escherichia coli E94 |
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Putative Escherichia coli E94 RM systems
Ref: zhu,Q. et al. unpublished
REBASE ref # 36398
| Sequence length: | GenBank #: | |
| Chromosome: | 5,138,043 bp | CP119740 |
| plasmid pE94-1: | 231,243 bp | CP119741 |
| plasmid pE94-2: | 101,030 bp | CP119742 |
| plasmid pE94-3: | 100,470 bp | CP119743 |
| plasmid pE94-4: | 99,623 bp | CP119744 |
| plasmid pE94-5: | 80,662 bp | CP119745 |
REBASE acronym: EcoE94
Org_num: 65780
All begin P1J23_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 6135 | IS1 family transposase | |||
| 6140 | R | Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | EcoE94ORF6150P |
| 6145 | S | S.Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | S.EcoE94ORF6150P |
| 6150 | M | M.SenS688ORF13495P (100% identity) | ACAYNNNNCTG | M.EcoE94ORF6150P |
| 6155 | integrase core domain-containing protein | |||
| 16655 | GTPase family protein | |||
| 16660 | M | M.Kpn1678ORF16290P (100% identity) | M.EcoE94ORF16660P | |
| 16665 | S | S.EcoE92ORF16665P (100% identity) | S.EcoE94ORF16660P | |
| 16670 | R | EcoE92ORF16665P (100% identity) | EcoE94ORF16660P | |
| 16675 | IS5-like element ISKpn26 family transposase | |||
| plasmid pE94-3 | ||||
| 27645 | type II toxin-antitoxin system Phd/YefM family | |||
| 27650 | M | M.EcoE92ORF27660P (100% identity) | M.EcoE94ORF27650P | |
| 27655 | S | S.SspS13ORF175P (100% identity) | S.EcoE94ORF27650P | |
| 27660 | R | KpnLL83ORF1P (100% identity) | EcoE94ORF27650P | |
| 27665 | 3-phosphatase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1900 | cell division protein DamX | |||
| 1905 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoE94DamP |
| 1910 | ribulose-phosphate 3-epimerase | |||
| 2525 | DUF2556 family protein | |||
| 2530 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.EcoE94ORF2530P |
| 2535 | DNA-binding transcriptional regulator Fis | |||
| 4570 | helix-turn-helix transcriptional regulator | |||
| 4575 | M | M.KpnYN1ORFGP (89% identity) | M.EcoE94ORF4575P | |
| 4580 | 71 aa hypothetical protein | |||
| 6295 | TrmB family transcriptional regulator | |||
| 6300 | M | M.EcoE92ORF14250P (100% identity) | M.EcoE94ORF6300P | |
| 6315 | TerB family tellurite resistance protein | |||
| 7775 | ead/Ea22-like family protein | |||
| 7780 | M | M.EcoE92ORF12765P (100% identity) | M.EcoE94ORF7780P | |
| 7785 | DUF2737 family protein | |||
| 10135 | phosphohydrolase | |||
| 10140 | M | M.SflSTLE1DcmP (100% identity) | CCWGG | M.EcoE94DcmP |
| 10145 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.EcoE94DcmP |
| 10150 | drug/metabolite exporter YedA | |||
| 12295 | DUF977 family protein | |||
| 12300 | M | M.SsoSE61ORF20220P (100% identity) | M.EcoE94ORF12300P | |
| 12305 | 95 aa hypothetical protein | |||
| 14705 | 343 aa hypothetical protein | |||
| 14710 | M | M.EcoR31ORF20500P (100% identity) | M.EcoE94ORF14710P | |
| 14715 | replication protein P | |||
| 15970 | 71 aa hypothetical protein | |||
| 15975 | M | M.Sen21974ORF23385P (100% identity) | M.EcoE94ORF15975P | |
| 15980 | 142 aa hypothetical protein | |||
| 17105 | replication endonuclease | |||
| 17110 | M | M.SspS13ORF8710P (100% identity) | GATC | M.EcoE94ORF17110P |
| 17115 | TraR/DksA family transcriptional regulator | |||
| plasmid pE94-1 | ||||
| 25905 | 48 aa hypothetical protein | |||
| 25910 | M | M.YpsF1ORFBP (100% identity) | M.EcoE94ORF25910P | |
| 25915 | 202 aa hypothetical protein | |||
| 26020 | DNA-binding protein | |||
| 26025 | M | M.YpsF1ORFDP (95% identity) | M.EcoE94ORF26025P | |
| 26030 | 284 aa hypothetical protein | |||
| 26610 | 55 aa hypothetical protein | |||
| 26615 | M | M.YpsF1ORFCP (100% identity) | CCWGG | M.EcoE94ORF26615P |
| 26620 | thermonuclease family protein | |||
| plasmid pE94-2 | ||||
| 27325 | 73 aa hypothetical protein | |||
| 27330 | M | M.Ecocq9ORF29710P (100% identity) | M.EcoE94ORF27330P | |
| 27335 | 103 aa hypothetical protein | |||
| plasmid pE94-3 | ||||
| 27760 | tellurite/colicin resistance protein | |||
| 27775 | M | M.EcoEA13ORF23875P (100% identity) | M.EcoE94ORF27775P | |
| 27780 | recombination-associated protein RdgC | |||
| plasmid pE94-4 | ||||
| 28300 | 101 aa hypothetical protein | |||
| 28305 | M | M.SenBR027ORFEP (100% identity) | SAY | M.EcoE94ORF28305P |
| 28310 | 73 aa hypothetical protein | |||
| plasmid pE94-5 | ||||
| 28675 | 73 aa hypothetical protein | |||
| 28680 | M | M.EcoE92ORF28800P (100% identity) | M.EcoE94ORF28680P | |
| 28685 | 100 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 14585 | isocitrate/isopropylmalate family dehydrogenase | |||
| 14590 | R | EcoE92McrCP (100% identity) | EcoE94McrCP | |
| 14595 | R | EcoteDMcrBP (100% identity) | EcoE94McrBP | |
| 14600 | recombinase family protein | |||