Bifidobacterium bifidum VSI20 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Bifidobacterium bifidum VSI20 RM systems
Ref: Whidbey,C. unpublished
REBASE ref # 36309
Complete sequence: 2,238,598 bp
GenBank #: CP118071
REBASE acronym: BbiVSI20
Org_num: 65445
All begin PUW47_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 5695 | argininosuccinate lyase | |||
| 5700 | R | BspTKUORF5680P (100% identity) | BbiVSI20ORF5715P | |
| 5705 | DNA binding domain-containing protein | |||
| 5710 | S | S.BbiBGN4ORF1079P (48% identity) | S1.BbiVSI20ORF5715P | |
| 5715 | M | M.BspTKUORF5680P (100% identity) | M.BbiVSI20ORF5715P | |
| 5720 | GIY-YIG nuclease family protein | |||
| 5725 | S | S2.BspSKUORF5675P (96% identity) | S2.BbiVSI20ORF5715P | |
| 5730 | tyrosine-type recombinase/integrase | |||
| 5735 | S | S1.PmeBin423ORFBP (40% identity) | S3.BbiVSI20ORF5715P | |
| 5740 | argininosuccinate synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1100 | beta-galactosidase | |||
| 1105 | R | BbiPRI1ORFGP (100% identity) | BbiVSI20ORF1105P | |
| 1110 | ATP-binding protein | |||
| 1735 | type II toxin-antitoxin system RelB/DinJ family | |||
| 1740 | M | M.BspTKUORF1745P (100% identity) | TCCGGA | M.BbiVSI20ORF1740P |
| 1745 | R | BspTKUORF1745P (100% identity) | TCCGGA | BbiVSI20ORF1740P |
| 1750 | type II toxin-antitoxin system RelB/DinJ family | |||
| 2865 | methyltransferase | |||
| 2870 | R | PmeBin303ORFBP (100% identity) | C | BbiVSI20ORF2870P |
| 2875 | GTPase HflX | |||
| 3605 | site-specific integrase | |||
| 3610 | M | M.PmeBin303ORFDP (100% identity) | CTCGAG | M.BbiVSI20ORF3610P |
| 3615 | R | PmeBin303ORFDP (100% identity) | CTCGAG | BbiVSI20ORF3610P |
| 3620 | GIY-YIG nuclease family protein | |||
| 7090 | aldehyde dehydrogenase family protein | |||
| 7095 | S | S.PmeBin303ORFCP (100% identity) | S.BbiVSI20ORF7100P | |
| 7100 | RM | BspTKUORF7035P (100% identity) | BbiVSI20ORF7100P | |
| 7105 | type II toxin-antitoxin system RelB/DinJ family | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4575 | AAA family ATPase | |||
| 4580 | R | BspTKUORF4570P (100% identity) | BbiVSI20ORF4585P | |
| 4585 | M | M.BspTKUORF4570P (100% identity) | M.BbiVSI20ORF4585P | |
| 4590 | DUF4391 domain-containing protein | |||