Salmonella enterica subsp. enterica serovar Derby RM005 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Salmonella enterica subsp. enterica serovar Derby RM005 RM systems
Ref: Lewis,G.L. et al. unpublished
REBASE ref # 36283
Complete sequence: 4,845,736 bp
GenBank #: CP117305
REBASE acronym: SenRM005
Org_num: 65355
All begin PQP92_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 19540 | 322 aa hypothetical protein | |||
| 19545 | R | SensTJX21ORF11885P (100% identity) | TACNNNNNNNGTTC | SenRM005ORF19550P |
| 19550 | M | M.SensTJX21ORF11885P (100% identity) | TACNNNNNNNGTTC | M.SenRM005ORF19550P |
| 19555 | S | S.SensTJX21ORF11885P (100% identity) | TACNNNNNNNGTTC | S.SenRM005ORF19550P |
| 19560 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1725 | cell division protein DamX | |||
| 1730 | M | M.StyTDamP (100% identity) | GATC | M.SenRM005DamP |
| 1735 | ribulose-phosphate 3-epimerase | |||
| 2215 | DUF2556 family protein | |||
| 2220 | M | M.StyUK1III (100% identity) | ATGCAT | M.SenRM005ORF2220P |
| 2225 | DNA-binding transcriptional regulator Fis | |||
| 5330 | integrase domain-containing protein | |||
| 5335 | M | M.SenRM006ORF5335P (100% identity) | M.SenRM005ORF5335P | |
| 5340 | AAA family ATPase | |||
| 5405 | PerC family transcriptional regulator | |||
| 5410 | M | M.Sso7924ORF2966P (100% identity) | GATC | M.SenRM005ORF5410P |
| 5415 | LexA family transcriptional regulator | |||
| 5440 | 67 aa hypothetical protein | |||
| 5445 | M | M.SflLIN17ORF17405P (100% identity) | M.SenRM005ORF5445P | |
| 5450 | phage holin, lambda family | |||
| 17370 | phage holin, lambda family | |||
| 17375 | M | M.SensSZL38ORF10585P (100% identity) | M.SenRM005ORF17375P | |
| 17380 | 92 aa hypothetical protein | |||
| 17405 | LexA family transcriptional regulator | |||
| 17410 | M | M.SflN101ORF11410P (100% identity) | GATC | M.SenRM005ORF17410P |
| 17415 | PerC family transcriptional regulator | |||
| 19685 | YebC/PmpR family DNA-binding transcriptional | |||
| 19690 | R | SensTJX21ORF12025P (100% identity) | SenRM005ORF19690P | |
| 19695 | fosfomycin resistance glutathione transferase | |||
| 19715 | RM | SensTJX21ORF12050P (100% identity) | SenRM005ORF19715P | |
| 19720 | DEAD/DEAH box helicase | |||
| 21330 | LexA family transcriptional regulator | |||
| 21335 | M | M.Sso90ORF15820P (100% identity) | GATC | M.SenRM005ORF21335P |
| 21340 | 28 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 17015 | small effector SsaA | |||
| 17020 | R | StyUK1IP (99% identity) | CAGAG | SenRM005ORF17025P |
| 17025 | M | M.SensTJX21ORF9690P (100% identity) | CAGAG | M.SenRM005ORF17025P |
| 17030 | MFS transporter | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 19720 | DEAD/DEAH box helicase | |||
| 19725 | R | SensTJX21ORF12060P (100% identity) | SenRM005ORF19725P | |
| 19730 | 104 aa hypothetical protein | |||