Salmonella enterica subsp. enterica serovar Derby RM004 |
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Putative Salmonella enterica subsp. enterica serovar Derby RM004 RM systems
Ref: Lewis,G.L. et al. unpublished
REBASE ref # 36283
Complete sequence: 4,833,020 bp
GenBank #: CP117307
REBASE acronym: SenRM004
Org_num: 65354
All begin PQQ01_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 19470 | 322 aa hypothetical protein | |||
| 19475 | R | SensTJX21ORF11885P (100% identity) | TACNNNNNNNGTTC | SenRM004ORF19480P |
| 19480 | M | M.SensTJX21ORF11885P (100% identity) | TACNNNNNNNGTTC | M.SenRM004ORF19480P |
| 19485 | S | S.SensTJX21ORF11885P (100% identity) | TACNNNNNNNGTTC | S.SenRM004ORF19480P |
| 19490 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1730 | cell division protein DamX | |||
| 1735 | M | M.SenRM008DamP (99% identity) | GATC | M.SenRM004DamP |
| 1740 | ribulose-phosphate 3-epimerase | |||
| 2220 | DUF2556 family protein | |||
| 2225 | M | M.StyUK1III (100% identity) | ATGCAT | M.SenRM004ORF2225P |
| 2230 | DNA-binding transcriptional regulator Fis | |||
| 5340 | integrase domain-containing protein | |||
| 5345 | M | M.SenRM006ORF5335P (100% identity) | M.SenRM004ORF5345P | |
| 5350 | AAA family ATPase | |||
| 5415 | PerC family transcriptional regulator | |||
| 5420 | M | M.Sso7924ORF2966P (100% identity) | GATC | M.SenRM004ORF5420P |
| 5425 | LexA family transcriptional regulator | |||
| 5450 | 67 aa hypothetical protein | |||
| 5455 | M | M.SflLIN17ORF17405P (100% identity) | M.SenRM004ORF5455P | |
| 5460 | phage holin, lambda family | |||
| 13520 | drug/metabolite exporter YedA | |||
| 13525 | V | V.StyUK1DcmP (100% identity) | CCWGG | V.SenRM004DcmP |
| 13530 | M | M.SensTJX21DcmP (100% identity) | CCWGG | M.SenRM004DcmP |
| 13535 | phosphohydrolase | |||
| 17300 | phage holin, lambda family | |||
| 17305 | M | M.SensSZL38ORF10585P (100% identity) | M.SenRM004ORF17305P | |
| 17310 | 92 aa hypothetical protein | |||
| 17335 | LexA family transcriptional regulator | |||
| 17340 | M | M.SflN101ORF11410P (100% identity) | GATC | M.SenRM004ORF17340P |
| 17345 | PerC family transcriptional regulator | |||
| 19615 | YebC/PmpR family DNA-binding transcriptional | |||
| 19620 | R | SensTJX21ORF12025P (100% identity) | SenRM004ORF19620P | |
| 19625 | fosfomycin resistance glutathione transferase | |||
| 19645 | RM | SensTJX21ORF12050P (100% identity) | SenRM004ORF19645P | |
| 19650 | DEAD/DEAH box helicase | |||
| 21260 | LexA family transcriptional regulator | |||
| 21265 | M | M.Sso90ORF15820P (100% identity) | GATC | M.SenRM004ORF21265P |
| 21270 | 28 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 19650 | DEAD/DEAH box helicase | |||
| 19655 | R | SensTJX21ORF12060P (100% identity) | SenRM004ORF19655P | |
| 19660 | 104 aa hypothetical protein | |||