Salmonella enterica subsp. enterica serovar Derby RM003 |
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Putative Salmonella enterica subsp. enterica serovar Derby RM003 RM systems
Ref: Lewis,G.L. et al. unpublished
REBASE ref # 36283
Complete sequence: 4,828,384 bp
GenBank #: CP117312
REBASE acronym: SenRM003
Org_num: 65353
All begin PQP99_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 7200 | endoribonuclease SymE | |||
| 7205 | S | S.SensTJX21ORF11885P (100% identity) | TACNNNNNNNGTTC | S.SenRM003ORF7210P |
| 7210 | M | M.SensTJX21ORF11885P (100% identity) | TACNNNNNNNGTTC | M.SenRM003ORF7210P |
| 7215 | R | SensTJX21ORF11885P (100% identity) | TACNNNNNNNGTTC | SenRM003ORF7210P |
| 7220 | 322 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1725 | cell division protein DamX | |||
| 1730 | M | M.StyTDamP (100% identity) | GATC | M.SenRM003DamP |
| 1735 | ribulose-phosphate 3-epimerase | |||
| 2215 | DUF2556 family protein | |||
| 2220 | M | M.StyUK1III (100% identity) | ATGCAT | M.SenRM003ORF2220P |
| 2225 | DNA-binding transcriptional regulator Fis | |||
| 5335 | integrase domain-containing protein | |||
| 5340 | M | M.SenRM006ORF5335P (100% identity) | M.SenRM003ORF5340P | |
| 5345 | AAA family ATPase | |||
| 5410 | PerC family transcriptional regulator | |||
| 5415 | M | M.Sso7924ORF2966P (100% identity) | GATC | M.SenRM003ORF5415P |
| 5420 | LexA family transcriptional regulator | |||
| 5445 | 67 aa hypothetical protein | |||
| 5450 | M | M.SflLIN17ORF17405P (100% identity) | M.SenRM003ORF5450P | |
| 5455 | phage holin, lambda family | |||
| 7040 | DEAD/DEAH box helicase | |||
| 7045 | RM | SensTJX21ORF12050P (100% identity) | SenRM003ORF7045P | |
| 7065 | fosfomycin resistance glutathione transferase | |||
| 7070 | R | SensTJX21ORF12025P (100% identity) | SenRM003ORF7070P | |
| 7075 | YebC/PmpR family DNA-binding transcriptional | |||
| 9350 | PerC family transcriptional regulator | |||
| 9355 | M | M.SflN101ORF11410P (100% identity) | GATC | M.SenRM003ORF9355P |
| 9360 | LexA family transcriptional regulator | |||
| 9385 | 92 aa hypothetical protein | |||
| 9390 | M | M.SensSZL38ORF10585P (100% identity) | M.SenRM003ORF9390P | |
| 9395 | phage holin, lambda family | |||
| 13160 | phosphohydrolase | |||
| 13165 | M | M.SensTJX21DcmP (100% identity) | CCWGG | M.SenRM003DcmP |
| 13170 | V | V.StyUK1DcmP (100% identity) | CCWGG | V.SenRM003DcmP |
| 13175 | drug/metabolite exporter YedA | |||
| 21220 | LexA family transcriptional regulator | |||
| 21225 | M | M.Sso90ORF15820P (100% identity) | GATC | M.SenRM003ORF21225P |
| 21230 | 28 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 7030 | 104 aa hypothetical protein | |||
| 7035 | R | SensTJX21ORF12060P (100% identity) | SenRM003ORF7035P | |
| 7040 | DEAD/DEAH box helicase | |||