Salmonella enterica subsp. enterica serovar Derby RM002 |
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Putative Salmonella enterica subsp. enterica serovar Derby RM002 RM systems
Ref: Lewis,G.L. et al. unpublished
REBASE ref # 36283
| Sequence length: | GenBank #: | |
| Chromosome: | 4,826,647 bp | CP117317 |
| plasmid pRM002_1: | 87,713 bp | CP117318 |
REBASE acronym: SenRM002
Org_num: 65352
All begin PQQ14_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19420 | 322 aa hypothetical protein | |||
| 19425 | R | SensTJX21ORF11885P (100% identity) | TACNNNNNNNGTTC | SenRM002ORF19430P |
| 19430 | M | M.SensTJX21ORF11885P (100% identity) | TACNNNNNNNGTTC | M.SenRM002ORF19430P |
| 19435 | S | S.SensTJX21ORF11885P (100% identity) | TACNNNNNNNGTTC | S.SenRM002ORF19430P |
| 19440 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1725 | cell division protein DamX | |||
| 1730 | M | M.StyTDamP (100% identity) | GATC | M.SenRM002DamP |
| 1735 | ribulose-phosphate 3-epimerase | |||
| 2215 | DUF2556 family protein | |||
| 2220 | M | M.StyUK1III (100% identity) | ATGCAT | M.SenRM002ORF2220P |
| 2225 | DNA-binding transcriptional regulator Fis | |||
| 5330 | integrase domain-containing protein | |||
| 5335 | M | M.SenRM006ORF5335P (100% identity) | M.SenRM002ORF5335P | |
| 5340 | AAA family ATPase | |||
| 5405 | PerC family transcriptional regulator | |||
| 5410 | M | M.Sso7924ORF2966P (100% identity) | GATC | M.SenRM002ORF5410P |
| 5415 | LexA family transcriptional regulator | |||
| 5440 | 67 aa hypothetical protein | |||
| 5445 | M | M.SflLIN17ORF17405P (100% identity) | M.SenRM002ORF5445P | |
| 5450 | phage holin, lambda family | |||
| 13470 | drug/metabolite exporter YedA | |||
| 13475 | V | V.StyUK1DcmP (100% identity) | CCWGG | V.SenRM002DcmP |
| 13480 | M | M.SensTJX21DcmP (100% identity) | CCWGG | M.SenRM002DcmP |
| 13485 | phosphohydrolase | |||
| 17250 | phage holin, lambda family | |||
| 17255 | M | M.SensSZL38ORF10585P (100% identity) | M.SenRM002ORF17255P | |
| 17260 | 92 aa hypothetical protein | |||
| 17285 | LexA family transcriptional regulator | |||
| 17290 | M | M.SflN101ORF11410P (100% identity) | GATC | M.SenRM002ORF17290P |
| 17295 | PerC family transcriptional regulator | |||
| 19565 | YebC/PmpR family DNA-binding transcriptional | |||
| 19570 | R | SensTJX21ORF12025P (100% identity) | SenRM002ORF19570P | |
| 19575 | fosfomycin resistance glutathione transferase | |||
| 19595 | RM | SensTJX21ORF12050P (100% identity) | SenRM002ORF19595P | |
| 19600 | DEAD/DEAH box helicase | |||
| 21215 | LexA family transcriptional regulator | |||
| 21220 | M | M.Sso90ORF15820P (100% identity) | GATC | M.SenRM002ORF21220P |
| 21225 | 28 aa hypothetical protein | |||
| plasmid pRM002_1 | ||||
| 23580 | 103 aa hypothetical protein | |||
| 23585 | M | M.Sso8ORF23800P (100% identity) | SAY | M.SenRM002ORF23585P |
| 23590 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19600 | DEAD/DEAH box helicase | |||
| 19605 | R | SensTJX21ORF12060P (100% identity) | SenRM002ORF19605P | |
| 19610 | 104 aa hypothetical protein | |||