Salmonella enterica subsp. enterica serovar Dublin RM100 |
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Putative Salmonella enterica subsp. enterica serovar Dublin RM100 RM systems
Ref: Lewis,G.L. et al. unpublished
REBASE ref # 36283
Complete sequence: 4,838,495 bp
GenBank #: CP117351
REBASE acronym: SenRM100
Org_num: 65363
All begin PQQ10_
| Type II | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1785 | cell division protein DamX | |||
| 1790 | M | M.StyTDamP (99% identity) | GATC | M.SenRM100DamP |
| 1795 | ribulose-phosphate 3-epimerase | |||
| 2275 | DUF2556 family protein | |||
| 2280 | M | M.StyUK1III (100% identity) | ATGCAT | M.SenRM100ORF2280P |
| 2285 | DNA-binding transcriptional regulator Fis | |||
| 5460 | TraR/DksA family transcriptional regulator | |||
| 5465 | M | M.Ssp8103ORF5415P (100% identity) | GATC | M.SenRM100ORF5465P |
| 5470 | replication endonuclease | |||
| 5475 | 62 aa hypothetical protein | |||
| 5480 | 99 aa hypothetical protein | |||
| 5485 | 268 aa hypothetical protein | |||
| 5490 | 60 aa hypothetical protein | |||
| 5495 | R | SenRM111ORF5460P (100% identity) | SenRM100ORF5465P | |
| 5500 | HEPN domain-containing protein | |||
| 9105 | 249 aa hypothetical protein | |||
| 9110 | M | M.Ssp3CORF22905P (100% identity) | M.SenRM100ORF9110P | |
| 9115 | ead/Ea22-like family protein | |||
| 9185 | PerC family transcriptional regulator | |||
| 9190 | M | M.Ssp3CORF22825P (100% identity) | GATC | M.SenRM100ORF9190P |
| 9195 | RusA family crossover junction | |||
| 14110 | drug/metabolite exporter YedA | |||
| 14115 | V | V.StyUK1DcmP (100% identity) | CCWGG | V.SenRM100DcmP |
| 14120 | M | M.Ssp3CDcmP (100% identity) | CCWGG | M.SenRM100DcmP |
| 14125 | phosphohydrolase | |||
| 14900 | DUF550 domain-containing protein | |||
| 14905 | M | M.Ssp3CORF17125P (100% identity) | M.SenRM100ORF14905P | |
| 14910 | ead/Ea22-like family protein | |||
| 20595 | YebC/PmpR family DNA-binding transcriptional | |||
| 20600 | R | SspSAL045ORF19515P (100% identity) | GAAC | SenRM100ORF20600P |
| 20605 | IS3 family transposase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 18250 | small effector SsaA | |||
| 18255 | R | Ssp3CORF13760P (100% identity) | CAGAG | SenRM100ORF18260P |
| 18260 | M | M.StyUK1I (100% identity) | CAGAG | M.SenRM100ORF18260P |
| 18265 | MFS transporter | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 20455 | 44 aa hypothetical protein | |||
| 20460 | R | Ssp3CMrrP (100% identity) | SenRM100MrrP | |
| 20465 | class I SAM-dependent DNA methyltransferase | |||