Salmonella enterica subsp. enterica serovar Dublin RM094 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Salmonella enterica subsp. enterica serovar Dublin RM094 RM systems
Ref: Lewis,G.L. et al. unpublished
REBASE ref # 36283
Complete sequence: 4,843,935 bp
GenBank #: CP117359
REBASE acronym: SenRM094
Org_num: 65361
All begin PQP87_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 20455 | 3-5 exonuclease | |||
| 20460 | S | S2.Ssp3CORF11555P (100% identity) | S2.SenRM094ORF20480P | |
| 20465 | N-6 DNA methylase | |||
| 20470 | 44 aa hypothetical protein | |||
| 20475 | restriction endonuclease | |||
| 20480 | M | M.StySBLI (100% identity) | M.SenRM094ORF20480P | |
| ??? | S | S1.Ssp3CORF11555P (100% identity) | GGYANNNNNNTCG | S1.SenRM094ORF20480P |
| 20495 | R | Ssp3CORF11555P (100% identity) | SenRM094ORF20480P | |
| 20500 | endonuclease NucS | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1785 | cell division protein DamX | |||
| 1790 | M | M.StyTDamP (100% identity) | GATC | M.SenRM094DamP |
| 1795 | ribulose-phosphate 3-epimerase | |||
| 2275 | DUF2556 family protein | |||
| 2280 | M | M.StyUK1III (100% identity) | ATGCAT | M.SenRM094ORF2280P |
| 2285 | DNA-binding transcriptional regulator Fis | |||
| 5460 | TraR/DksA family transcriptional regulator | |||
| 5465 | M | M.Ssp8103ORF5415P (100% identity) | GATC | M.SenRM094ORF5465P |
| 5470 | replication endonuclease | |||
| 5475 | 62 aa hypothetical protein | |||
| 5480 | 99 aa hypothetical protein | |||
| 5485 | 268 aa hypothetical protein | |||
| 5490 | 60 aa hypothetical protein | |||
| 5495 | R | SenRM111ORF5460P (100% identity) | SenRM094ORF5465P | |
| 5500 | HEPN domain-containing protein | |||
| 9175 | PerC family transcriptional regulator | |||
| 9180 | M | M.Ssp3CORF22825P (100% identity) | GATC | M.SenRM094ORF9180P |
| 9185 | RusA family crossover junction | |||
| 14105 | drug/metabolite exporter YedA | |||
| 14110 | V | V.StyUK1DcmP (100% identity) | CCWGG | V.SenRM094DcmP |
| 14115 | M | M.Ssp3CDcmP (100% identity) | CCWGG | M.SenRM094DcmP |
| 14120 | phosphohydrolase | |||
| 14900 | DUF550 domain-containing protein | |||
| 14905 | M | M.Ssp3CORF17125P (100% identity) | M.SenRM094ORF14905P | |
| 14910 | ead/Ea22-like family protein | |||
| 20610 | YebC/PmpR family DNA-binding transcriptional | |||
| 20615 | R | SspSAL045ORF19515P (100% identity) | GAAC | SenRM094ORF20615P |
| 20620 | IS3 family transposase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 18270 | small effector SsaA | |||
| 18275 | R | Ssp3CORF13760P (100% identity) | CAGAG | SenRM094ORF18280P |
| 18280 | M | M.StyUK1I (100% identity) | CAGAG | M.SenRM094ORF18280P |
| 18285 | MFS transporter | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 20470 | 44 aa hypothetical protein | |||
| 20475 | R | Ssp3CMrrP (100% identity) | SenRM094MrrP | |
| 20480 | class I SAM-dependent DNA methyltransferase | |||