Salmonella enterica subsp. enterica serovar Dublin RM043 |
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Putative Salmonella enterica subsp. enterica serovar Dublin RM043 RM systems
Ref: Lewis,G.L. et al. unpublished
REBASE ref # 36283
Complete sequence: 4,851,116 bp
GenBank #: CP117373
REBASE acronym: SenRM043
Org_num: 65357
All begin PQQ08_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 20505 | 3-5 exonuclease | |||
| ??? | S | S2.Ssp3CORF11555P (97% identity) | S.SenRM043ORF20520P | |
| 20520 | M | M.SenRM099ORF20455P (100% identity) | M.SenRM043ORF20520P | |
| 20525 | 44 aa hypothetical protein | |||
| 20530 | restriction endonuclease | |||
| 20535 | M | M.StySBLI (100% identity) | M.SenRM043ORF20535P | |
| 20540 | S | S1.Ssp3CORF11555P (32% identity) | S1.SenRM043ORF20535P | |
| 20545 | S | S2.Sen12710ORF4263P (100% identity) | S2.SenRM043ORF20535P | |
| 20550 | R | Ssp3CORF11555P (100% identity) | SenRM043ORF20535P | |
| 20555 | endonuclease NucS | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1785 | cell division protein DamX | |||
| 1790 | M | M.SenRM079Dam3P (100% identity) | GATC | M.SenRM043DamP |
| 1795 | ribulose-phosphate 3-epimerase | |||
| 2275 | DUF2556 family protein | |||
| 2280 | M | M.StyUK1III (100% identity) | ATGCAT | M.SenRM043ORF2280P |
| 2285 | DNA-binding transcriptional regulator Fis | |||
| 5485 | TraR/DksA family transcriptional regulator | |||
| 5490 | M | M.Ssp8103ORF5415P (99% identity) | GATC | M.SenRM043ORF5490P |
| 5495 | replication endonuclease | |||
| 5500 | 62 aa hypothetical protein | |||
| 5505 | 99 aa hypothetical protein | |||
| 5510 | 268 aa hypothetical protein | |||
| 5515 | 60 aa hypothetical protein | |||
| 5520 | R | SenRM111ORF5460P (100% identity) | SenRM043ORF5490P | |
| 5525 | HEPN domain-containing protein | |||
| 9215 | PerC family transcriptional regulator | |||
| 9220 | M | M.Ssp3CORF22825P (100% identity) | GATC | M.SenRM043ORF9220P |
| 9225 | RusA family crossover junction | |||
| 14145 | drug/metabolite exporter YedA | |||
| 14150 | V | V.StyUK1DcmP (100% identity) | CCWGG | V.SenRM043DcmP |
| 14155 | M | M.Ssp3CDcmP (100% identity) | CCWGG | M.SenRM043DcmP |
| 14160 | phosphohydrolase | |||
| 14935 | DUF550 domain-containing protein | |||
| 14940 | M | M.Ssp3CORF17125P (100% identity) | M.SenRM043ORF14940P | |
| 14945 | ead/Ea22-like family protein | |||
| 20665 | YebC/PmpR family DNA-binding transcriptional | |||
| 20670 | R | SspSAL045ORF19515P (100% identity) | GAAC | SenRM043ORF20670P |
| 20675 | IS3 family transposase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 18305 | small effector SsaA | |||
| 18310 | R | Ssp3CORF13760P (100% identity) | CAGAG | SenRM043ORF18315P |
| 18315 | M | M.StyUK1I (100% identity) | CAGAG | M.SenRM043ORF18315P |
| 18320 | MFS transporter | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 20525 | 44 aa hypothetical protein | |||
| 20530 | R | Ssp3CMrrP (100% identity) | SenRM043MrrP | |
| 20535 | class I SAM-dependent DNA methyltransferase | |||