Clostridioides difficile RT010 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Clostridioides difficile RT010 RM systems
Ref: Etifa,P. et al. unpublished
REBASE ref # 36234
Complete sequence: 4,186,156 bp
GenBank #: CP118392
REBASE acronym: CdiRT010
Org_num: 65228
All begin PWJ89_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 12640 | tagatose-bisphosphate aldolase subunit GatY | |||
| 12645 | M | M.Pdi6602ORF710241P (100% identity) | GCAYNNNNNNTTC | M.CdiRT010ORF12645P |
| 12650 | S | S.Pdi6602ORF710241P (100% identity) | GCAYNNNNNNTTC | S.CdiRT010ORF12645P |
| 12655 | 102 aa hypothetical protein | |||
| 12660 | nucleotidyltransferase domain-containing | |||
| 12665 | 142 aa hypothetical protein | |||
| 12670 | R | Pdi6602ORF710241P (100% identity) | GCAYNNNNNNTTC | CdiRT010ORF12645P |
| 12675 | DUF262 domain-containing HNH endonuclease family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 865 | 65 aa hypothetical protein | |||
| 870 | M | M.CdiS0352ORF4245P (100% identity) | GATC | M.CdiRT010ORF870P |
| 875 | 44 aa hypothetical protein | |||
| 3730 | 69 aa hypothetical protein | |||
| 3735 | M | M.PdiZ31ORF1645P (100% identity) | M.CdiRT010ORF3735P | |
| 3740 | 111 aa hypothetical protein | |||
| 9310 | 63 aa hypothetical protein | |||
| 9315 | M | M.Pdi6602ORF790080P (100% identity) | GATC | M.CdiRT010ORF9315P |
| ??? | R | CdiRSS11ORF18865P (100% identity) | GATC | CdiRT010ORF9315P |
| 9325 | 112 aa hypothetical protein | |||
| 11275 | 111 aa hypothetical protein | |||
| 11280 | M | M.CdiRSS11ORF16895P (100% identity) | M.CdiRT010ORF11280P | |
| 11285 | 76 aa hypothetical protein | |||
| 12195 | DrmE family protein | |||
| 12200 | M | M.Pdi6602ORF710333P (100% identity) | GCNGC | M.CdiRT010ORF12200P |
| 12205 | class B sortase | |||
| 13950 | Rrf2 family transcriptional regulator | |||
| 13955 | M | M.PdiZ31ORF1541P (100% identity) | CAAAAA | M.CdiRT010ORF13955P |
| 13960 | patatin-like phospholipase family protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 12670 | DEAD/DEAH box helicase family protein | |||
| 12675 | R | Pdi6602GmrSDP (100% identity) | CdiRT010GmrSDP | |
| 12680 | ECF transporter S component | |||
| 17350 | cell division protein | |||
| 17355 | R | Pdi6602McrBP (100% identity) | CdiRT010McrBP | |
| 17360 | R | Pdi6602McrCP (100% identity) | CdiRT010McrCP | |
| 17365 | sigma 54-interacting transcriptional regulator | |||