Streptococcus pneumoniae D39 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Streptococcus pneumoniae D39 RM systems
Ref: Antezana,B.S. et al. unpublished
REBASE ref # 36294
| Sequence length: | GenBank #: | |
| Chromosome: | 2,034,212 bp | CP118285 |
| Chromosome: | 2,188,535 bp | CP118289 |
| Chromosome: | 2,078,470 bp | CP118288 |
| Chromosome: | 2,032,511 bp | CP118286 |
| Chromosome: | 2,037,657 bp | CP118287 |
REBASE acronym:
Org_num:
All begin PVA24_, PVA26_, PVA29_, PVA34_, PVA38_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1335 | DUF2812 domain-containing protein | |||
| 1340 | R | SpnsD39dORF9220P (100% identity) | SpnsD39bORF1345P | |
| 1345 | M | M.Sps7493ORF8970P (100% identity) | M.SpnsD39bORF1345P | |
| 1350 | S | S1.SpnsD39cORF3680P (100% identity) | CRAANNNNNNNNCTT | S1.SpnsD39bORF1345P |
| 1355 | S | S2.SpnsD39dORF10335P (100% identity) | CRAANNNNNNNNNTTC | S2.SpnsD39bORF1345P |
| 1360 | tyrosine-type DNA invertase PsrA | |||
| 1365 | S | S3.SpnsD39cORF3680P (100% identity) | CRAANNNNNNNNCTG | S3.SpnsD39bORF1345P |
| 1370 | cell envelope | |||
| 3185 | 41 aa hypothetical protein | |||
| 3190 | M | M.SpnsD39dORF3010P (100% identity) | M.SpnsD39bORF3190P | |
| 3195 | S | S.SpnsD39dORF3010P (100% identity) | S.SpnsD39bORF3190P | |
| 3200 | R | SpnsD39dORF3010P (100% identity) | SpnsD39bORF3190P | |
| 3205 | 66 aa hypothetical protein | |||
| Chromosome | ||||
| 4940 | cell envelope | |||
| ??? | S | S3.SpnSP87ORFCP (100% identity) | CACNNNNNNNCTG | S.SpnsD39ORF4945P |
| 4950 | tyrosine-type DNA invertase PsrA | |||
| 5200 | 41 aa hypothetical protein | |||
| 5205 | M | M.SpnsD39dORF3010P (100% identity) | M.SpnsD39ORF5205P | |
| 5210 | S | S.SpnsD39dORF3010P (100% identity) | S.SpnsD39ORF5205P | |
| 5215 | R | SpnsD39dORF3010P (100% identity) | SpnsD39ORF5205P | |
| 5220 | 66 aa hypothetical protein | |||
| 8740 | 54 aa hypothetical protein | |||
| 8745 | S | S.SpnsD39dORF9220P (59% identity) | S.SpnsD39ORF8750P | |
| 8750 | M | M.Sps7493ORF8970P (100% identity) | M.SpnsD39ORF8750P | |
| 8755 | R | SpnsD39dORF9220P (100% identity) | SpnsD39ORF8750P | |
| 8760 | DUF2812 domain-containing protein | |||
| Chromosome | ||||
| 3655 | cell envelope | |||
| 3660 | S | S3.SpnsD39bORF1345P (100% identity) | CRAANNNNNNNNCTG | S3.SpnsD39cORF3680P |
| 3665 | tyrosine-type DNA invertase PsrA | |||
| 3670 | S | S2.SpnsD39dORF10335P (100% identity) | CRAANNNNNNNNNTTC | S2.SpnsD39cORF3680P |
| 3675 | S | S1.SpnsD39bORF1345P (100% identity) | CRAANNNNNNNNCTT | S1.SpnsD39cORF3680P |
| 3680 | M | M.Sps7493ORF8970P (100% identity) | M.SpnsD39cORF3680P | |
| 3685 | R | SpnsD39dORF9220P (100% identity) | SpnsD39cORF3680P | |
| 3690 | DUF2812 domain-containing protein | |||
| 5215 | 66 aa hypothetical protein | |||
| 5220 | R | Spn70ORF3965P (100% identity) | SpnsD39cORF5255P | |
| 5225 | S | S3.SpnXen35ORF4400P (100% identity) | S3.SpnsD39cORF5255P | |
| 5230 | tyrosine-type recombinase/integrase | |||
| 5235 | type II toxin-antitoxin system death-on-curing | |||
| 5240 | AbrB family transcriptional regulator | |||
| 5245 | S | S2.SpnST62ORF5795P (90% identity) | S2.SpnsD39cORF5255P | |
| 5250 | S | S1.SpnSP89IP (97% identity) | S1.SpnsD39cORF5255P | |
| 5255 | M | M.Spn70ORF3965P (100% identity) | M.SpnsD39cORF5255P | |
| 5260 | 41 aa hypothetical protein | |||
| Chromosome | ||||
| 495 | DUF2812 domain-containing protein | |||
| 500 | R | SpnsD39dORF9220P (100% identity) | SpnsD39aORF505P | |
| 505 | M | M.Sps7493ORF8970P (100% identity) | M.SpnsD39aORF505P | |
| 510 | S | S1.SpnRIII (100% identity) | CRAANNNNNNNNCTG | S1.SpnsD39aORF505P |
| 515 | tyrosine-type DNA invertase PsrA | |||
| 520 | S | S2.SpnsD39dORF10335P (100% identity) | CRAANNNNNNNNNTTC | S2.SpnsD39aORF505P |
| 525 | S | S.SpnD39VORF454P (87% identity) | S3.SpnsD39aORF505P | |
| 530 | cell envelope | |||
| 3690 | 66 aa hypothetical protein | |||
| 3695 | R | SpnsD39dORF3010P (100% identity) | SpnsD39aORF3705P | |
| 3700 | S | S.SpnsD39dORF3010P (100% identity) | S.SpnsD39aORF3705P | |
| 3705 | M | M.SpnsD39dORF3010P (100% identity) | M.SpnsD39aORF3705P | |
| 3710 | 41 aa hypothetical protein | |||
| Chromosome | ||||
| 2995 | 66 aa hypothetical protein | |||
| 3000 | R | SpnsD39bORF3190P (100% identity) | SpnsD39dORF3010P | |
| 3005 | S | S.SpnsD39bORF3190P (100% identity) | S.SpnsD39dORF3010P | |
| 3010 | M | M.SpnsD39bORF3190P (100% identity) | M.SpnsD39dORF3010P | |
| 3015 | 41 aa hypothetical protein | |||
| 9185 | gamma-glutamylcysteine synthetase | |||
| 9215 | S | S1.SpnsD39cORF3680P (46% identity) | S.SpnsD39dORF9220P | |
| 9220 | M | M.Sps7493ORF8970P (100% identity) | M.SpnsD39dORF9220P | |
| 9225 | R | SpnsD39cORF3680P (100% identity) | SpnsD39dORF9220P | |
| 9230 | DUF2812 domain-containing protein | |||
| 10330 | 517 aa hypothetical protein LASAK_01637 | |||
| 10335 | S | S1.SpnsD39cORF3680P (34% identity) | S1.SpnsD39dORF10335P | |
| 10340 | S | S2.SpnsD39cORF3680P (100% identity) | CRAANNNNNNNNNTTC | S2.SpnsD39dORF10335P |
| 10345 | tyrosine-type DNA invertase PsrA | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4960 | U32 family peptidase | |||
| 4965 | R | SpnsD39dORF4195P (100% identity) | TCTAGA | SpnsD39bORF4970P |
| 4970 | M | M.SpnsD39dORF4195P (100% identity) | TCTAGA | M.SpnsD39bORF4970P |
| 4975 | AraC family transcriptional regulator | |||
| 5405 | L-lactate dehydrogenase | |||
| 5410 | RM | SpnsD39dORF4855BP (100% identity) | TCGAG | SpnsD39bORF5410BP |
| 5415 | RM | SpnsD39dORF4855AP (100% identity) | TCGAG | SpnsD39bORF5410AP |
| 5420 | type II toxin-antitoxin system RelE/ParE family | |||
| Chromosome | ||||
| 9315 | L-lactate dehydrogenase | |||
| 9320 | RM | SpnsD39dORF4855BP (100% identity) | TCGAG | SpnsD39ORF9320P |
| 9325 | restriction endonuclease | |||
| 10710 | ABC transporter ATP-binding protein | |||
| 10720 | M | M.Sps7493ORF7115P (56% identity) | M.SpnsD39ORF10720P | |
| 10725 | PIG-L family deacetylase | |||
| Chromosome | ||||
| 1600 | 149 aa hypothetical protein | |||
| 1605 | M | M.Spn70ORF6330P (100% identity) | M.SpnsD39cORF1605P | |
| 1610 | replication initiator protein A | |||
| 1980 | U32 family peptidase | |||
| 1985 | R | SpnsD39dORF4195P (100% identity) | TCTAGA | SpnsD39cORF1990P |
| 1990 | M | M.SpnsD39dORF4195P (100% identity) | TCTAGA | M.SpnsD39cORF1990P |
| 1995 | AraC family transcriptional regulator | |||
| 5575 | L-lactate dehydrogenase | |||
| 5580 | RM | SpnsD39dORF4855BP (100% identity) | TCGAG | SpnsD39cORF5580BP |
| 5585 | RM | SpnsD39dORF4855AP (100% identity) | TCGAG | SpnsD39cORF5580AP |
| 5590 | type II toxin-antitoxin system RelE/ParE family | |||
| Chromosome | ||||
| 4875 | AraC family transcriptional regulator | |||
| 4880 | M | M.SpnsD39dORF4195P (100% identity) | TCTAGA | M.SpnsD39aORF4880P |
| 4885 | R | SpnsD39dORF4195P (100% identity) | TCTAGA | SpnsD39aORF4880P |
| 4890 | U32 family peptidase | |||
| 5760 | type II toxin-antitoxin system RelE/ParE family | |||
| 5765 | RM | SpnsD39dORF4855AP (100% identity) | TCGAG | SpnsD39aORF5765AP |
| 5770 | RM | SpnsD39dORF4855BP (100% identity) | TCGAG | SpnsD39aORF5765BP |
| 5775 | L-lactate dehydrogenase | |||
| Chromosome | ||||
| 4190 | AraC family transcriptional regulator | |||
| 4195 | M | M.SpnsD39cORF1990P (100% identity) | TCTAGA | M.SpnsD39dORF4195P |
| 4200 | R | SpnsD39cORF1990P (100% identity) | TCTAGA | SpnsD39dORF4195P |
| 4205 | U32 family peptidase | |||
| 4850 | L-lactate dehydrogenase | |||
| 4855 | RM | SpnsD39cORF5580BP (100% identity) | TCGAG | SpnsD39dORF4855BP |
| 4860 | RM | SpnsD39cORF5580AP (100% identity) | TCGAG | SpnsD39dORF4855AP |
| 4865 | type II toxin-antitoxin system RelE/ParE family | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5550 | GMP reductase | |||
| 5555 | R | SpnsD39dMcrCP (100% identity) | SpnsD39bMcrCP | |
| 5560 | R | SpnsD39dMcrBP (100% identity) | SpnsD39bMcrBP | |
| 5565 | translation factor (SUA5) | |||
| Chromosome | ||||
| 7790 | transposase | |||
| 7795 | R | SpnsD39dMcrBP (75% identity) | SpnsD39McrBP | |
| 7800 | R | SpnsD39dMcrCP (100% identity) | SpnsD39McrCP | |
| 7805 | GMP reductase | |||
| Chromosome | ||||
| 5720 | GMP reductase | |||
| 5725 | R | SpnsD39dMcrCP (100% identity) | SpnsD39cMcrCP | |
| 5730 | R | SpnsD39dMcrBP (100% identity) | SpnsD39cMcrBP | |
| 5735 | translation factor (SUA5) | |||
| Chromosome | ||||
| 5615 | translation factor (SUA5) | |||
| 5620 | R | SpnsD39dMcrBP (100% identity) | SpnsD39aMcrBP | |
| 5625 | R | SpnsD39dMcrCP (100% identity) | SpnsD39aMcrCP | |
| 5630 | GMP reductase | |||
| Chromosome | ||||
| 4995 | GMP reductase | |||
| 5000 | R | SpnsD39cMcrCP (100% identity) | SpnsD39dMcrCP | |
| 5005 | R | SpnsD39cMcrBP (100% identity) | SpnsD39dMcrBP | |
| 5010 | translation factor (SUA5) | |||