Xanthomonas campestris pv. campestris 10008 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Xanthomonas campestris pv. campestris 10008 RM systems
Ref: Dubrow,Z.E. et al. Mol Plant Microbe Interact 35 (9), 791-802 (2022)
REBASE ref # 36208
| Sequence length: | GenBank #: | |
| Chromosome: | 5,033,626 bp | CP066972 |
| plasmid unnamed: | 160,731 bp | CP066973 |
REBASE acronym: Xca10008
Org_num: 65577
All begin JH312_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 6435 | M48 family metallopeptidase | |||
| 6440 | R | Xca10006ORF6465P (100% identity) | Xca10008ORF6460P | |
| 6445 | S | S2.Xca10006ORF6465P (100% identity) | S2.Xca10008ORF6460P | |
| 6450 | virulence RhuM family protein | |||
| 6455 | damage-inducible protein D | |||
| 6460 | M | M.Xca10006ORF6465P (100% identity) | M.Xca10008ORF6460P | |
| 6465 | S | S1.Xca10006ORF6465P (100% identity) | S1.Xca10008ORF6460P | |
| 6470 | 86 aa hypothetical protein | |||
| 15780 | 98 aa hypothetical protein | |||
| 15785 | R | Xca10006ORF15800P (100% identity) | GAGNNNNNNCTT | Xca10008ORF15800P |
| 15790 | S | S.Xca793ORF15865P (100% identity) | GAGNNNNNNCTT | S.Xca10008ORF15800P |
| 15795 | virulence RhuM family protein | |||
| 15800 | M | M.Xca10006ORF15800P (100% identity) | GAGNNNNNNCTT | M.Xca10008ORF15800P |
| 15805 | Mrr restriction system protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3075 | IS3-like element IS1404 family transposase | |||
| 3080 | R | XcaYORFAP (98% identity) | Xca10008ORF3080P | |
| 3085 | 90 aa hypothetical protein | |||
| 13005 | ATP-binding protein | |||
| 13010 | M | M.Xca10006ORF13015P (100% identity) | M.Xca10008ORF13010P | |
| 13015 | DNA repair protein RadC | |||
| plasmid unnamed | ||||
| 22065 | 265 aa hypothetical protein | |||
| 22070 | M | M.Xca12112ORF22200P (100% identity) | M.Xca10008ORF22070P | |
| 22075 | 214 aa hypothetical protein | |||
| 22120 | recombination-associated protein RdgC | |||
| 22125 | M | M.Xca12112ORF22255P (100% identity) | M.Xca10008ORF22125P | |
| 22130 | 192 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 7320 | 71 aa hypothetical protein | |||
| 7325 | R | Xca5817McrBP (100% identity) | Xca10008McrBP | |
| 7330 | R | XcaCN13aMcrCP (100% identity) | Xca10008McrCP | |
| 7335 | sensor histidine kinase | |||
| 15800 | SAM-dependent DNA methyltransferase | |||
| 15805 | R | Xcacc2MrrP (100% identity) | Xca10008MrrP | |
| 15810 | type II toxin-antitoxin system RelE/ParE family | |||