Glaesserella parasuis XP11 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Glaesserella parasuis XP11 RM systems
Ref: Che,Y. and Zhou,L. unpublished
REBASE ref # 28502
Complete sequence: 2,412,602 bp
GenBank #: CP118165
REBASE acronym: GpaXP11
Org_num: 65261
All begin PUV55_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1260 | transposase | |||
| 1265 | R | HpaMNHORF509P (99% identity) | GpaXP11ORF1280P | |
| 1270 | AAA family ATPase | |||
| 1275 | S | S1.Hin9ORF4455P (36% identity) | S.GpaXP11ORF1280P | |
| 1280 | M | M.HpaMNHORF509P (99% identity) | M.GpaXP11ORF1280P | |
| 1285 | RNA polymerase sigma factor RpoE | |||
| 3125 | histidinol-phosphate transaminase | |||
| 3130 | R | HpaH465ORF433P (99% identity) | GpaXP11ORF3145P | |
| 3135 | FRG domain-containing protein | |||
| 3140 | S | S.Gpa104ORFCP (60% identity) | S.GpaXP11ORF3145P | |
| 3145 | M | M.Gpa70512ORF5180P (99% identity) | M.GpaXP11ORF3145P | |
| 3150 | 3-phosphoserine/phosphohydroxythreonine | |||
| 8425 | IS110 family transposase | |||
| 8430 | S | S.HpaNNII (99% identity) | GTANNNNNNNCTTG | S.GpaXP11ORF8450P |
| 8435 | R | Hpa15995ORF1625P (99% identity) | GTANNNNNNNCTTG | GpaXP11ORF8450P |
| 8440 | ATP-binding protein | |||
| 8445 | 163 aa hypothetical protein | |||
| 8450 | M | M.HpaST41ORF7145P (100% identity) | GTANNNNNNNCTTG | M.GpaXP11ORF8450P |
| 8455 | 16S rRNA (guanine(527)-N(7))-methyltransferase | |||
| 9305 | 137 aa hypothetical protein | |||
| 9310 | M | M.Hpa29755ORF1214P (100% identity) | M.GpaXP11ORF9310P | |
| 9315 | AAA family ATPase | |||
| 9320 | S | S.HpaSH03ORF10045P (37% identity) | S1.GpaXP11ORF9310P | |
| 9325 | S | S2.HpaST41ORF7300P (97% identity) | S2.GpaXP11ORF9310P | |
| 9330 | DUF1829 domain-containing protein | |||
| 9335 | 145 aa hypothetical protein | |||
| 9340 | R | GpaH80ORF9625P (98% identity) | GpaXP11ORF9310P | |
| 9345 | 123 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 605 | peptide chain release factor 1 | |||
| 610 | M | M.HpaSH03ORF2165P (100% identity) | GCGC | M.GpaXP11ORF610P |
| 615 | R | HpaSHORF791P (100% identity) | GCGC | GpaXP11ORF610P |
| 620 | peptide chain release factor N(5)-glutamine | |||
| 2520 | addiction module antidote protein | |||
| 2525 | M | M.Hpa906ORF3855P (100% identity) | M.GpaXP11ORF2525P | |
| 2530 | 140 aa hypothetical protein | |||
| 2850 | IS256 family transposase | |||
| 2855 | S | S.HpaSHORF1955P (58% identity) | S.GpaXP11ORF2865P | |
| 2860 | R | Gpa104ORFOP (99% identity) | GpaXP11ORF2865P | |
| 2865 | M | M.HpaSHORF1954P (100% identity) | M.GpaXP11ORF2865P | |
| 2870 | 53 aa hypothetical protein | |||
| 3560 | 199 aa hypothetical protein | |||
| 3565 | M | M.HpaNagORF227P (96% identity) | M.GpaXP11ORF3565P | |
| 3570 | chromosome partition protein MukE | |||
| 4960 | 3-dehydroquinate synthase | |||
| 4965 | M | M.Gpa412ORF3305P (100% identity) | GATC | M.GpaXP11ORF4965P |
| 4970 | sodium-dependent transporter | |||
| 5765 | flavodoxin-dependent | |||
| 5770 | M | M.HpaST41ORF8905P (100% identity) | CGCG | M.GpaXP11ORF5770P |
| 5775 | R | HpaST41ORF8905P (100% identity) | CGCG | GpaXP11ORF5770P |
| 5780 | 2-hydroxyacid dehydrogenase | |||
| 6135 | adhesin | |||
| 6140 | M | M.HpaNNORF10520P (85% identity) | M.GpaXP11ORF6140P | |
| 6145 | 86 aa hypothetical protein | |||
| 6910 | 112 aa hypothetical protein | |||
| 6915 | M | M1.HpaSH03ORF7930P (100% identity) | M1.GpaXP11ORF6915P | |
| 6920 | M | M2.HpaSH03ORF7930P (100% identity) | M2.GpaXP11ORF6915P | |
| 6925 | RM | HpaSH03ORF7930P (100% identity) | GpaXP11ORF6915P | |
| 6930 | type II toxin-antitoxin system VapC family | |||
| 7510 | zeta toxin family protein | |||
| 7515 | R | HpaSHORF1983P (99% identity) | AAGCTT | GpaXP11ORF7520P |
| 7520 | M | M.HpaSH03ORF8550P (100% identity) | AAGCTT | M.GpaXP11ORF7520P |
| 7525 | valine--tRNA ligase | |||
| 9565 | DUF4143 domain-containing protein | |||
| 9570 | RM | HpaSHORF1761P (100% identity) | GpaXP11ORF9570P | |
| 9575 | S | S.HpaSHORF1761P (99% identity) | S.GpaXP11ORF9570P | |
| 9580 | restriction endonuclease subunit S | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 7220 | IS1595 family transposase | |||
| 7225 | R | Hpa318ORF6275P (99% identity) | GpaXP11ORF7230P | |
| 7230 | M | M.HpaST41ORF1100P (100% identity) | M.GpaXP11ORF7230P | |
| 7235 | 44 aa hypothetical protein | |||
| 10005 | ketol-acid reductoisomerase | |||
| 10010 | M | M.GpaHF57ORF830P (98% identity) | M.GpaXP11ORF10010P | |
| 10015 | R | Gpa104ORFHP (98% identity) | GpaXP11ORF10010P | |
| 10020 | Fic family protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6405 | FAD-dependent oxidoreductase | |||
| 6410 | R | Gpad76GmrSDP (99% identity) | GpaXP11GmrSDP | |
| 6415 | amino acid ABC transporter ATP-binding protein | |||