Salmonella enterica subsp. enterica serovar Mbandaka SM_F28R |
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Putative Salmonella enterica subsp. enterica serovar Mbandaka SM_F28R RM systems
Ref: Song,H. unpublished
REBASE ref # 33181
| Sequence length: | GenBank #: | |
| Chromosome: | 4,861,942 bp | CP117852 |
| Chromosome: | 4,861,942 bp | CP138307 |
| plasmid pSM28_NDM_1: | 210,622 bp | CP138308 |
REBASE acronym: SenF28R
Org_num: 65175
All begin P3094_, PTZ66_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5120 | endoribonuclease SymE | |||
| 5125 | S | S.SenXB08ORF19780P (100% identity) | CACNNNNNNNRTRTC | S.SenF28RORF5130P |
| 5130 | M | M.SenXB08ORF19780P (100% identity) | CACNNNNNNNRTRTC | M.SenF28RORF5130P |
| 5135 | R | SenXB08ORF19780P (100% identity) | CACNNNNNNNRTRTC | SenF28RORF5130P |
| 5140 | 322 aa hypothetical protein | |||
| Chromosome | ||||
| 20050 | 322 aa hypothetical protein | |||
| 20055 | R | SenXB08ORF19780P (100% identity) | CACNNNNNNNRTRTC | Sen8RaORF20060P |
| 20060 | M | M.SenXB08ORF19780P (100% identity) | CACNNNNNNNRTRTC | M.Sen8RaORF20060P |
| 20065 | S | S.SenXB08ORF19780P (100% identity) | CACNNNNNNNRTRTC | S.Sen8RaORF20060P |
| 20070 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4970 | 97 aa hypothetical protein | |||
| 4975 | R | SenXB08ORF19940P (100% identity) | SenF28RORF4975P | |
| 4980 | response regulator receiver domain | |||
| 4980 | response regulator receiver domain | |||
| 4985 | R | SenXB08ORF19920P (100% identity) | RCCGGY | SenF28RORF4990P |
| 4990 | M | M.SenXB08ORF19920P (100% identity) | RCCGGY | M.SenF28RORF4990P |
| 4995 | IS3 family transposase | |||
| 5855 | 55 aa hypothetical protein | |||
| 5860 | M | M.YpsF1ORFCP (100% identity) | CCWGG | M.SenF28RORF5860P |
| 5865 | thermonuclease family protein | |||
| 6405 | cell division protein DamX | |||
| 6410 | M | M.StyTDamP (100% identity) | GATC | M.SenF28RDamP |
| 6415 | ribulose-phosphate 3-epimerase | |||
| 6895 | DUF2556 family protein | |||
| 6900 | M | M.StyUK1III (100% identity) | ATGCAT | M.SenF28RORF6900P |
| 6905 | DNA-binding transcriptional regulator Fis | |||
| 10070 | zinc ribbon domain-containing protein | |||
| 10075 | M | M.SenXB08ORF5455P (100% identity) | GGTACC | M.SenF28RORF10075P |
| 10080 | 470 aa hypothetical protein | |||
| 10135 | TraR/DksA family transcriptional regulator | |||
| 10140 | M | M.SenSMB30RaORF14970P (100% identity) | M.SenF28RORF10140P | |
| 10145 | replication endonuclease | |||
| 13665 | phosphohydrolase | |||
| 13670 | M | M.SenXB08DcmP (100% identity) | CCWGG | M.SenF28RDcmP |
| 13675 | V | V.StyUK1DcmP (100% identity) | CCWGG | V.SenF28RDcmP |
| 13680 | drug/metabolite exporter YedA | |||
| 18465 | lysis protein | |||
| 18470 | M | M.Sens24230ORF14570P (100% identity) | M.SenF28RORF18470P | |
| 18475 | lysozyme | |||
| 18515 | methyltransferase | |||
| 18520 | M | M.Sens29945ORF7970P (100% identity) | GATC | M.SenF28RORF18520P |
| 18525 | 82 aa hypothetical protein | |||
| Chromosome | ||||
| 6645 | 82 aa hypothetical protein | |||
| 6650 | M | M.Sens29945ORF7970P (100% identity) | GATC | M.Sen8RaORF6650P |
| 6655 | methyltransferase | |||
| 6695 | lysozyme | |||
| 6700 | M | M.Sens24230ORF14570P (100% identity) | M.Sen8RaORF6700P | |
| 6705 | lysis protein | |||
| 11505 | drug/metabolite exporter YedA | |||
| 11510 | V | V.StyUK1DcmP (100% identity) | CCWGG | V.Sen8RaDcmP |
| 11515 | M | M.SenXB08DcmP (100% identity) | CCWGG | M.Sen8RaDcmP |
| 11520 | phosphohydrolase | |||
| 15045 | replication endonuclease | |||
| 15050 | M | M.SenSMB30RaORF14970P (100% identity) | M.Sen8RaORF15050P | |
| 15055 | TraR/DksA family transcriptional regulator | |||
| 15110 | 470 aa hypothetical protein | |||
| 15115 | M | M.SenXB08ORF5455P (100% identity) | GGTACC | M.Sen8RaORF15115P |
| 15120 | zinc ribbon domain-containing protein | |||
| 18285 | DNA-binding transcriptional regulator Fis | |||
| 18290 | M | M.StyUK1III (100% identity) | ATGCAT | M.Sen8RaORF18290P |
| 18295 | DUF2556 family protein | |||
| 18775 | ribulose-phosphate 3-epimerase | |||
| 18780 | M | M.StyTDamP (100% identity) | GATC | M.Sen8RaDamP |
| 18785 | cell division protein DamX | |||
| 19325 | thermonuclease family protein | |||
| 19330 | M | M.YpsF1ORFCP (100% identity) | CCWGG | M.Sen8RaORF19330P |
| 19335 | 55 aa hypothetical protein | |||
| 20210 | response regulator receiver domain | |||
| 20215 | R | SenXB08ORF19940P (100% identity) | Sen8RaORF20215P | |
| 20220 | 97 aa hypothetical protein | |||
| plasmid pSM28_NDM_1 | ||||
| 24355 | 100 aa hypothetical protein | |||
| 24360 | M | M.YrupYR1ORFCP (100% identity) | CCNGG | M.Sen8RaORF24360P |
| 24365 | 143 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3405 | MFS transporter | |||
| 3410 | M | M.SenXB08ORF17480P (100% identity) | CAGAG | M.Sen8RaORF3410P |
| 3415 | R | SspA292ORF17210P (100% identity) | CAGAG | Sen8RaORF3410P |
| 3420 | small effector SsaA | |||