Salmonella enterica subsp. enterica serovar Mbandaka SM_B30R |
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Putative Salmonella enterica subsp. enterica serovar Mbandaka SM_B30R RM systems
Ref: Song,H. unpublished
REBASE ref # 33181
| Sequence length: | GenBank #: | |
| Chromosome: | 4,848,834 bp | CP117851 |
| Chromosome: | 4,848,834 bp | CP138305 |
| plasmid pSM30_NDM_1: | 238,640 bp | CP138306 |
REBASE acronym: SenB30R
Org_num: 65171
All begin P3188_, PTZ67_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5575 | 322 aa hypothetical protein | |||
| 5580 | R | SenXB08ORF19780P (100% identity) | CACNNNNNNNRTRTC | SenB30RORF5585P |
| 5585 | M | M.SenXB08ORF19780P (100% identity) | CACNNNNNNNRTRTC | M.SenB30RORF5585P |
| 5590 | S | S.SenXB08ORF19780P (100% identity) | CACNNNNNNNRTRTC | S.SenB30RORF5585P |
| 5595 | endoribonuclease SymE | |||
| Chromosome | ||||
| 19970 | 322 aa hypothetical protein | |||
| 19975 | R | SenXB08ORF19780P (100% identity) | CACNNNNNNNRTRTC | SenSMB30RaORF19980P |
| 19980 | M | M.SenXB08ORF19780P (100% identity) | CACNNNNNNNRTRTC | M.SenSMB30RaORF19980P |
| 19985 | S | S.SenXB08ORF19780P (100% identity) | CACNNNNNNNRTRTC | S.SenSMB30RaORF19980P |
| 19990 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 560 | replication endonuclease | |||
| 565 | M | M.SenSMB30RaORF14970P (100% identity) | M.SenB30RORF565P | |
| 570 | TraR/DksA family transcriptional regulator | |||
| 625 | 470 aa hypothetical protein | |||
| 630 | M | M.SenXB08ORF5455P (100% identity) | GGTACC | M.SenB30RORF630P |
| 635 | zinc ribbon domain-containing protein | |||
| 3810 | DNA-binding transcriptional regulator Fis | |||
| 3815 | M | M.StyUK1III (100% identity) | ATGCAT | M.SenB30RORF3815P |
| 3820 | DUF2556 family protein | |||
| 4300 | ribulose-phosphate 3-epimerase | |||
| 4305 | M | M.StyTDamP (100% identity) | GATC | M.SenB30RDamP |
| 4310 | cell division protein DamX | |||
| 4850 | thermonuclease family protein | |||
| 4855 | M | M.YpsF1ORFCP (100% identity) | CCWGG | M.SenB30RORF4855P |
| 4860 | 55 aa hypothetical protein | |||
| 5720 | IS3 family transposase | |||
| 5725 | M | M.SenXB08ORF19920P (100% identity) | RCCGGY | M.SenB30RORF5725P |
| 5730 | R | SenXB08ORF19920P (100% identity) | RCCGGY | SenB30RORF5725P |
| 5735 | response regulator receiver domain | |||
| 5735 | response regulator receiver domain | |||
| 5740 | R | SenXB08ORF19940P (100% identity) | SenB30RORF5740P | |
| 5745 | 97 aa hypothetical protein | |||
| 15825 | 82 aa hypothetical protein | |||
| 15830 | M | M.Sens29945ORF7970P (100% identity) | GATC | M.SenB30RORF15830P |
| 15835 | methyltransferase | |||
| 15875 | lysozyme | |||
| 15880 | M | M.Sens24230ORF14570P (100% identity) | M.SenB30RORF15880P | |
| 15885 | lysis protein | |||
| 20675 | drug/metabolite exporter YedA | |||
| 20680 | V | V.StyUK1DcmP (100% identity) | CCWGG | V.SenB30RDcmP |
| 20685 | M | M.SenXB08DcmP (100% identity) | CCWGG | M.SenB30RDcmP |
| 20690 | phosphohydrolase | |||
| Chromosome | ||||
| 6565 | 82 aa hypothetical protein | |||
| 6570 | M | M.Sens29945ORF7970P (100% identity) | GATC | M.SenSMB30RaORF6570P |
| 6575 | methyltransferase | |||
| 6615 | lysozyme | |||
| 6620 | M | M.Sens24230ORF14570P (100% identity) | M.SenSMB30RaORF6620P | |
| 6625 | lysis protein | |||
| 11425 | drug/metabolite exporter YedA | |||
| 11430 | V | V.StyUK1DcmP (100% identity) | CCWGG | V.SenSMB30RaDcmP |
| 11435 | M | M.SenXB08DcmP (100% identity) | CCWGG | M.SenSMB30RaDcmP |
| 11440 | phosphohydrolase | |||
| 14965 | replication endonuclease | |||
| 14970 | M | M.SenF28SORFEP (100% identity) | M.SenSMB30RaORF14970P | |
| 14975 | TraR/DksA family transcriptional regulator | |||
| 15030 | 470 aa hypothetical protein | |||
| 15035 | M | M.SenXB08ORF5455P (100% identity) | GGTACC | M.SenSMB30RaORF15035P |
| 15040 | zinc ribbon domain-containing protein | |||
| 18205 | DNA-binding transcriptional regulator Fis | |||
| 18210 | M | M.StyUK1III (100% identity) | ATGCAT | M.SenSMB30RaORF18210P |
| 18215 | DUF2556 family protein | |||
| 18695 | ribulose-phosphate 3-epimerase | |||
| 18700 | M | M.StyTDamP (100% identity) | GATC | M.SenSMB30RaDamP |
| 18705 | cell division protein DamX | |||
| 19245 | thermonuclease family protein | |||
| 19250 | M | M.YpsF1ORFCP (100% identity) | CCWGG | M.SenSMB30RaORF19250P |
| 19255 | 55 aa hypothetical protein | |||
| 20130 | response regulator receiver domain | |||
| 20135 | R | SenXB08ORF19940P (100% identity) | SenSMB30RaORF20135P | |
| 20140 | 97 aa hypothetical protein | |||
| plasmid pSM30_NDM_1 | ||||
| 24270 | 100 aa hypothetical protein | |||
| 24275 | M | M.YrupYR1ORFCP (100% identity) | CCNGG | M.SenSMB30RaORF24275P |
| 24280 | 143 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3325 | MFS transporter | |||
| 3330 | M | M.SenXB08ORF17480P (100% identity) | CAGAG | M.SenSMB30RaORF3330P |
| 3335 | R | SspA292ORF17210P (100% identity) | CAGAG | SenSMB30RaORF3330P |
| 3340 | small effector SsaA | |||