Escherichia coli MLI106K4 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli MLI106K4 RM systems
Ref: Riediger,M. and Zautner,A.E. unpublished
REBASE ref # 36146
| Sequence length: | GenBank #: | |
| Chromosome: | 4,981,147 bp | CP117053 |
| plasmid p174_MLI106-4: | 174,496 bp | CP117050 |
REBASE acronym: Eco06K4
Org_num: 64909
All begin NL407_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19765 | GTPase family protein | |||
| 19770 | M | M.Sso8ORF17680P (100% identity) | AAAYNNNNNNCTC | M.Eco06K4ORF19770P |
| 19775 | S | S.Sso8ORF17680P (100% identity) | AAAYNNNNNNCTC | S.Eco06K4ORF19770P |
| 19780 | R | Eco06K2ORF19780P (100% identity) | AAAYNNNNNNCTC | Eco06K4ORF19770P |
| 19785 | IS5-like element ISKpn26 family transposase | |||
| 21615 | adenine/cytosine-specific restriction | |||
| 21620 | R | Ecoo241ORF21620P (100% identity) | AACNNNNNNGTGC | Eco06K4ORF21625P |
| 21625 | M | M.Ecos69ORF1130P (100% identity) | AACNNNNNNGTGC | M.Eco06K4ORF21625P |
| 21630 | S | S.Ecos69ORF1130P (100% identity) | AACNNNNNNGTGC | S.Eco06K4ORF21625P |
| 21635 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2780 | cell division protein DamX | |||
| 2785 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco06K4DamP |
| 2790 | ribulose-phosphate 3-epimerase | |||
| 3415 | DUF2556 family protein | |||
| 3420 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.Eco06K4ORF3420P |
| 3425 | DNA-binding transcriptional regulator Fis | |||
| 10650 | helix-turn-helix domain-containing protein | |||
| 10655 | M | M.Eco06K2ORF10660P (100% identity) | M.Eco06K4ORF10655P | |
| 10660 | RusA family crossover junction | |||
| 10900 | phosphohydrolase | |||
| 10905 | M | M.SflSTLE1DcmP (100% identity) | CCWGG | M.Eco06K4DcmP |
| 10910 | V | V.SflSTLE1DcmP (100% identity) | V.Eco06K4DcmP | |
| 10915 | drug/metabolite exporter YedA | |||
| 19680 | zinc ribbon domain-containing protein | |||
| 19685 | M | M.EcosEC31ORF18555P (100% identity) | GGTACC | M.Eco06K4ORF19685P |
| 19690 | tyrosine-type recombinase/integrase | |||
| plasmid p174_MLI106-4 | ||||
| 900 | 73 aa hypothetical protein | |||
| 905 | M | M.KpnVA569ORF28145P (100% identity) | M.Eco06K4ORF905P | |
| 910 | 103 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 21610 | GTPase | |||
| 21615 | R | Ssp28760MrrP (100% identity) | Eco06K4MrrP | |
| 21620 | type I restriction-modification system | |||