Salmonella enterica subsp. enterica serovar Thompson |
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Putative Salmonella enterica subsp. enterica serovar Thompson RM systems
Ref: Lee,W. et al. Sci Rep 12 (1), 20553 (2022)
REBASE ref # 36033
| Sequence length: | GenBank #: | |
| Chromosome: | 4,822,450 bp | CP092510 |
| plasmid pMFDS1011659: | 92,361 bp | CP092511 |
REBASE acronym: SenTh
Org_num: 64536
All begin MKE90_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19835 | 322 aa hypothetical protein | |||
| 19840 | R | Spy5740IP (100% identity) | AGANNNNNNNNCTGG | SenThORF19845P |
| 19845 | M | M.Spy5740I (100% identity) | AGANNNNNNNNCTGG | M.SenThORF19845P |
| 19850 | S | S.Spy5740I (100% identity) | AGANNNNNNNNCTGG | S.SenThORF19845P |
| 19855 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1795 | cell division protein DamX | |||
| 1800 | M | M.StyTDamP (100% identity) | GATC | M.SenThDamP |
| 1805 | ribulose-phosphate 3-epimerase | |||
| 2285 | DUF2556 family protein | |||
| 2290 | M | M.SenSth02ORF450P (100% identity) | ATGCAT | M.SenThORF2290P |
| 2295 | DNA-binding transcriptional regulator Fis | |||
| 9460 | phosphohydrolase | |||
| 9465 | M | M.SspZ54DcmP (100% identity) | CCWGG | M.SenThDcmP |
| 9470 | V | V.StyUK1DcmP (100% identity) | CCWGG | V.SenThDcmP |
| 9475 | drug/metabolite exporter YedA | |||
| 19975 | YebC/PmpR family DNA-binding transcriptional | |||
| 19980 | R | SensS639ORF19755P (100% identity) | SenThORF19980P | |
| 19985 | 239 aa hypothetical protein | |||
| 19985 | 239 aa hypothetical protein | |||
| 19990 | R | Spy5740IVP (100% identity) | GGTACC | SenThORF19995P |
| 19995 | M | M.Spy5740IV (100% identity) | GGTACC | M.SenThORF19995P |
| 20000 | 202 aa hypothetical protein | |||
| 22355 | replication endonuclease | |||
| 22360 | M | M.Sen11716ORF22370P (100% identity) | M.SenThORF22360P | |
| 22365 | 129 aa hypothetical protein | |||
| plasmid pMFDS1011659 | ||||
| 23615 | glutamine--tRNA ligase | |||
| ??? | M | M.SenS315ORF25715P (100% identity) | M.SenThORF23620P | |
| 23625 | 216 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 17510 | small effector SsaA | |||
| 17515 | R | Ssp15303ORFGP (99% identity) | CAGAG | SenThORF17520P |
| 17520 | M | M.Spy5740II (100% identity) | CAGAG | M.SenThORF17520P |
| 17525 | MFS transporter | |||