Citrobacter freundii 2953647 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Citrobacter freundii 2953647 RM systems
Ref: Hergert,J. et al. unpublished
REBASE ref # 35260
| Sequence length: | GenBank #: | |
| Chromosome: | 4,999,663 bp | CP114564 |
| plasmid unnamed1: | 359,392 bp | CP114565 |
| plasmid unnamed2: | 210,045 bp | CP114566 |
| plasmid unnamed3: | 117,198 bp | CP114567 |
| plasmid unnamed4: | 110,089 bp | CP114568 |
| plasmid unnamed5: | 85,590 bp | CP114569 |
REBASE acronym: Cfr3647
Org_num: 64010
All begin O4000_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 11675 | N-6 DNA methylase | |||
| 11680 | R | CfrGORF11545P (100% identity) | Cfr3647ORF11680P | |
| 11685 | translesion error-prone DNA polymerase V | |||
| 21035 | restriction endonuclease | |||
| 21040 | R | CfrGORF20560P (100% identity) | Cfr3647ORF21045P | |
| 21045 | M | M.CfrGORF20560P (100% identity) | M.Cfr3647ORF21045P | |
| ??? | S | S.CfrGORF20560P (100% identity) | S.Cfr3647ORF21045P | |
| 21060 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1790 | cell division protein DamX | |||
| 1795 | M | M.Eco5172DamP (100% identity) | GATC | M.Cfr3647DamP |
| 1800 | ribulose-phosphate 3-epimerase | |||
| 2335 | DUF2556 family protein | |||
| 2340 | M | M.CspLUTT5ORF2195P (100% identity) | ATGCAT | M.Cfr3647ORF2340P |
| 2345 | DNA-binding transcriptional regulator Fis | |||
| 8925 | phosphohydrolase | |||
| 8930 | M | M.CfrHM38III (100% identity) | CCWGG | M.Cfr3647DcmP |
| 8935 | V | V.CfrL75DcmP (100% identity) | V.Cfr3647DcmP | |
| 8940 | drug/metabolite exporter YedA | |||
| 9410 | 180 aa hypothetical protein | |||
| 9415 | M | M.Csp944ORF10665P (100% identity) | M.Cfr3647ORF9415P | |
| 9420 | 114 aa hypothetical protein | |||
| 9470 | conserved phage C-terminal domain-containing | |||
| 9475 | M | M.CfrB38ORF1058P (99% identity) | M1.Cfr3647ORF9475P | |
| 9480 | M | M.CfrB38ORF1059P (100% identity) | M2.Cfr3647ORF9475P | |
| 9485 | RusA family crossover junction | |||
| 10915 | 97 aa hypothetical protein | |||
| 10920 | M | M.CfrGORF10785P (100% identity) | M.Cfr3647ORF10920P | |
| 10925 | 72 aa hypothetical protein | |||
| 14235 | DUF1737 domain-containing protein | |||
| 14255 | M | M.CfrGORF14110P (100% identity) | M.Cfr3647ORF14255P | |
| 14260 | 264 aa hypothetical protein | |||
| 16065 | 70 aa hypothetical protein | |||
| 16070 | M | M.CfrGORF15925P (100% identity) | M.Cfr3647ORF16070P | |
| 16075 | DUF3850 domain-containing protein | |||
| 19125 | 94 aa hypothetical protein | |||
| 19130 | M | M1.Cfr369ORF19120P (100% identity) | M1.Cfr3647ORF19130P | |
| 19135 | 72 aa hypothetical protein | |||
| 19140 | TraR/DksA family transcriptional regulator | |||
| 19145 | M | M.Eco1277ORF20790P (100% identity) | M2.Cfr3647ORF19130P | |
| 19150 | DUF4222 domain-containing protein | |||
| plasmid unnamed1 | ||||
| 25235 | 55 aa hypothetical protein | |||
| 25240 | M | M.SenZC055ORF26240P (100% identity) | CCWGG | M.Cfr3647ORF25240P |
| 25245 | thermonuclease family protein | |||
| 25815 | 102 aa hypothetical protein | |||
| 25820 | M | M.SenZC055ORF24890P (100% identity) | M.Cfr3647ORF25820P | |
| 25825 | 203 aa hypothetical protein | |||
| 26200 | DNA-binding protein | |||
| 26205 | M | M1.SenF8025ORFBP (100% identity) | M.Cfr3647ORF26205P | |
| 26210 | 273 aa hypothetical protein | |||
| plasmid unnamed2 | ||||
| 26435 | 120 aa hypothetical protein | |||
| 26440 | M | M.Sma6556ORF27745P (100% identity) | M.Cfr3647ORF26440P | |
| 26445 | 143 aa hypothetical protein | |||
| 26855 | 100 aa hypothetical protein | |||
| 26860 | M | M.YrupYR1ORFCP (100% identity) | CCNGG | M.Cfr3647ORF26860P |
| 26865 | 143 aa hypothetical protein | |||
| plasmid unnamed3 | ||||
| 27770 | 67 aa hypothetical protein | |||
| 27775 | M | M.EasIK3ORFGP (84% identity) | M.Cfr3647ORF27775P | |
| 27780 | 73 aa hypothetical protein | |||
| plasmid unnamed4 | ||||
| 28710 | 76 aa hypothetical protein | |||
| 28715 | M | M.CfrGORF25495P (100% identity) | M.Cfr3647ORF28715P | |
| 28720 | 280 aa hypothetical protein | |||
| plasmid unnamed5 | ||||
| 29030 | recombination-associated protein RdgC | |||
| 29035 | M | M.Cfr369ORF28370P (100% identity) | M.Cfr3647ORF29035P | |
| 29040 | adenylosuccinate synthase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 21030 | GTPase | |||
| 21035 | R | Cfr5125MrrP (100% identity) | Cfr3647MrrP | |
| 21040 | type I restriction-modification system | |||