Avibacterium paragallinarum C-AP1 |
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Putative Avibacterium paragallinarum C-AP1 RM systems
Ref: Zhang,J.P. unpublished
REBASE ref # 35746
Complete sequence: 2,614,420 bp
GenBank #: CP113786
REBASE acronym: ApaCAP1
Org_num: 63619
All begin OY678_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1575 | pyridoxal phosphate-dependent aminotransferase | |||
| 1580 | R | Apap4ORF1655P (100% identity) | ApaCAP1ORF1600P | |
| 1585 | ATP F0F1 synthase synthase | |||
| 1590 | S | S.Apap4ORF1655P (100% identity) | S.ApaCAP1ORF1600P | |
| 1595 | DNA binding domain-containing protein | |||
| 1600 | M | M.Apap4ORF1655P (100% identity) | M.ApaCAP1ORF1600P | |
| 1605 | fatty acid metabolism transcriptional regulator | |||
| 6240 | MFS transporter | |||
| 6245 | S | S3.Apap4ORF12165P (100% identity) | S1.ApaCAP1ORF6245P | |
| 6250 | S | S2.Apap4ORF12165P (100% identity) | S2.ApaCAP1ORF6245P | |
| 6255 | S | S1.Apap4ORF12165P (100% identity) | S3.ApaCAP1ORF6245P | |
| 6260 | R | Apap4ORF12165P (100% identity) | ApaCAP1ORF6245P | |
| 6265 | DUF262 domain-containing protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2930 | 30S ribosomal protein S12 methylthiotransferase | |||
| 2935 | RM | Apap4ORF13055P (100% identity) | ApaCAP1ORF2945P | |
| 2940 | M | M2.Apap4ORF13055P (100% identity) | M2.ApaCAP1ORF2945P | |
| 2945 | M | M1.Apap4ORF13055P (100% identity) | M1.ApaCAP1ORF2945P | |
| 2950 | 153 aa hypothetical protein | |||
| 4250 | endolytic transglycosylase MltG | |||
| 4255 | S | S.Apap4ORF9860P (81% identity) | S.ApaCAP1ORF4260P | |
| 4260 | RM | ApaZ3CORFFP (99% identity) | ApaCAP1ORF4260P | |
| 4265 | phosphoglycerate dehydrogenase | |||
| 10045 | 62 aa hypothetical protein | |||
| 10050 | M | M.Apap4ORF2215P (100% identity) | M.ApaCAP1ORF10050P | |
| 10055 | DNA methyltransferase | |||
| 10080 | ATP-binding protein | |||
| 10085 | M | M.Apap4ORF7290P (100% identity) | M.ApaCAP1ORF10085P | |
| 10090 | recombination protein NinB | |||
| 10725 | 124 aa hypothetical protein | |||
| 10730 | M | M1.ApaESV135ORF2000P (97% identity) | M.ApaCAP1ORF10730P | |
| 10735 | 40 aa hypothetical protein | |||
| 10795 | DciA family protein | |||
| 10800 | M | M.ApasMORFNP (100% identity) | GATC | M.ApaCAP1ORF10800P |
| 10805 | 3-dehydroquinate synthase | |||
| 11760 | replication protein P | |||
| 11765 | M | M.Apap4ORF7715P (100% identity) | M.ApaCAP1ORF11765P | |
| 11770 | DUF1367 family protein | |||
| 12770 | type II toxin-antitoxin system HicA family | |||
| 12775 | M | M.Apap4ORF8230P (88% identity) | M.ApaCAP1ORF12775P | |
| 12780 | class I SAM-dependent methyltransferase | |||
| 12960 | 86 aa hypothetical protein | |||
| 12965 | M | M1.Apap4ORF7445P (26% identity) | M.ApaCAP1ORF12965AP | |
| 12970 | 103 aa hypothetical protein | |||
| 12975 | M | M1.Apap4ORF7925P (91% identity) | M.ApaCAP1ORF12965BP | |
| 12980 | 51 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3040 | elongation factor Tu | |||
| 3055 | R | Apap4ORF2990P (100% identity) | ApaCAP1ORF3060P | |
| 3060 | M | M.ApaCAP4ORF5175BP (100% identity) | M.ApaCAP1ORF3060BP | |
| 3065 | M | M.Apap4ORF2990P (40% identity) | M.ApaCAP1ORF3060AP | |
| 3070 | 381 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6260 | DEAD/DEAH box helicase family protein | |||
| 6265 | R | ApaZ3CGmrSDP (100% identity) | ApaCAP1GmrSDP | |
| 6270 | virulence RhuM family protein | |||