Escherichia coli 16843 |
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Putative Escherichia coli 16843 RM systems
Ref: Kazantsev,A.V. et al. unpublished
REBASE ref # 35778
Complete sequence: 5,167,586 bp
GenBank #: CP113503
REBASE acronym: Eco16843
Org_num: 63718
All begin OWO50_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 20525 | DUF262 domain-containing HNH endonuclease family | |||
| 20530 | R | EcosLF82ORF3455P (100% identity) | GGANNNNNNNNATGC | Eco16843ORF20535P |
| 20535 | M | M.EcosLF82ORF3455P (100% identity) | GGANNNNNNNNATGC | M.Eco16843ORF20535P |
| 20540 | S | S.EcosA32I (100% identity) | GGANNNNNNNNATGC | S.Eco16843ORF20535P |
| 20545 | endoribonuclease SymE | |||
| 22030 | lactate utilization protein C | |||
| 22035 | R | EcoW087ORF4400P (100% identity) | Eco16843ORF22045P | |
| 22040 | S | S.EcoWH398ORF26840P (100% identity) | S.Eco16843ORF22045P | |
| 22045 | M | M.EcoNo12ORF1045P (100% identity) | M.Eco16843ORF22045P | |
| 22050 | DNA-binding protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 340 | osmoprotectant transport activator ProQ | |||
| 345 | M | M.SflFF24DndBP (100% identity) | M.Eco16843DndBP | |
| 350 | DNA phosphorothioation system sulfurtransferase | |||
| 345 | DNA sulfur modification protein DndB | |||
| 350 | M | M.SflFF24DndCP (100% identity) | M.Eco16843DndCP | |
| 355 | DNA sulfur modification protein DndD | |||
| 350 | DNA phosphorothioation system sulfurtransferase | |||
| 355 | M | M.SflFF24DndDP (100% identity) | M.Eco16843DndDP | |
| 360 | DNA sulfur modification protein DndE | |||
| 355 | DNA sulfur modification protein DndD | |||
| 360 | M | M.SflFF24DndEP (100% identity) | M.Eco16843DndEP | |
| 365 | DNA phosphorothioation-associated DGQHR protein | |||
| 425 | accessory gene regulator B family protein | |||
| 430 | R | Eco1808DptHP (100% identity) | Eco16843DptHP | |
| 435 | DNA phosphorothioation-dependent restriction | |||
| 430 | DNA phosphorothioation-dependent restriction | |||
| 435 | R | SenLY67DptGP (100% identity) | Eco16843DptGP | |
| 440 | DNA phosphorothioation-dependent restriction | |||
| 435 | DNA phosphorothioation-dependent restriction | |||
| 440 | R | SenLY67DptFP (100% identity) | Eco16843DptFP | |
| 445 | integrase | |||
| 2545 | DUF2556 family protein | |||
| 2550 | M | M.Sdy12039ORFBP (100% identity) | ATGCAT | M.Eco16843ORF2550P |
| 2555 | DNA-binding transcriptional regulator Fis | |||
| 9990 | phosphohydrolase | |||
| 9995 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.Eco16843DcmP |
| 10000 | V | V.SflC32DcmP (74% identity) | CCWGG | V.Eco16843DcmP |
| 10005 | drug/metabolite exporter YedA | |||
| 20260 | phage holin, lambda family | |||
| 20265 | M | M.Ecoi127aORF3990P (100% identity) | M.Eco16843ORF20265P | |
| 20270 | 95 aa hypothetical protein | |||
| 20305 | LexA family transcriptional regulator | |||
| 20310 | M | M.Sso90ORF15820P (100% identity) | GATC | M.Eco16843ORF20310P |
| 20315 | PerC family transcriptional regulator | |||
| 20715 | HNH endonuclease | |||
| 20720 | R | Ecoi127aORF4076P (98% identity) | Eco16843ORF20720P | |
| 20725 | peptidase | |||
| 21020 | conjugal transfer protein TraG N-terminal | |||
| 21025 | M | M.EcosS3ORF15775P (100% identity) | M.Eco16843ORF21025P | |
| 21030 | R | EcosS3ORF15775P (100% identity) | Eco16843ORF21025P | |
| 21035 | response regulator receiver domain | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 20545 | endoribonuclease SymE | |||
| 20550 | R | EcoUTGmrSD2P (52% identity) | Eco16843GmrSDP | |
| 20555 | DUF262 domain-containing protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 14015 | NinE family protein | |||
| 14020 | M | M.EcosC25ORF16305P (100% identity) | GATC | M.Eco16843ORF14020P |
| 14025 | recombination protein NinB | |||