Pseudomonas species ZM23 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Pseudomonas species ZM23 RM systems
Ref: Yin,Y. and Lu,Z. unpublished
REBASE ref # 35830
Complete sequence: 6,245,384 bp
GenBank #: CP113432
REBASE acronym: PspZM23
Org_num: 63886
All begin OU419_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 540 | 196 aa hypothetical protein | |||
| 545 | C | C.PaeZM21ORF33335P (100% identity) | C.PspZM23ORF555P | |
| 550 | R | PaeZM21ORF33335P (100% identity) | PspZM23ORF555P | |
| 555 | M | M.PaeZM21ORF33335P (100% identity) | M.PspZM23ORF555P | |
| 560 | S | S.PstST9ORF5760P (100% identity) | S.PspZM23ORF555P | |
| 565 | 49 aa hypothetical protein | |||
| 1460 | sigma 54-interacting transcriptional regulator | |||
| 1465 | R | Pae85ORFFP (98% identity) | PspZM23ORF1475P | |
| 1470 | DNA recombination protein RmuC | |||
| 1475 | M | M.PaestS1ORF10775P (98% identity) | M.PspZM23ORF1475P | |
| 1480 | S | S.PciTE3ORF1855P (100% identity) | S.PspZM23ORF1475P | |
| 1485 | AAA family ATPase | |||
| 18565 | recombinase family protein | |||
| 18570 | R | Paz17556ORFEP (97% identity) | PspZM23ORF18580P | |
| 18575 | S | S.PaePALA6ORF2068P (58% identity) | S.PspZM23ORF18580P | |
| 18580 | M | M.PaeLo422ORF18575P (88% identity) | M.PspZM23ORF18580P | |
| 18585 | 206 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1370 | 242 aa hypothetical protein | |||
| 1375 | M | M.Pde13867ORF1225P (91% identity) | M.PspZM23ORF1375P | |
| 1380 | R | Pde13867ORF1225P (91% identity) | PspZM23ORF1375P | |
| 1385 | AbrB/MazE/SpoVT family DNA-binding | |||
| 6315 | MerR family transcriptional regulator | |||
| 6320 | RM | PstJ15ORF6260P (99% identity) | PspZM23ORF6320P | |
| 6325 | 172 aa hypothetical protein | |||
| 6585 | helix-turn-helix domain-containing protein | |||
| 6590 | M | M2.LhuHB2ORFHP (97% identity) | M1.PspZM23ORF6590P | |
| 6595 | M | M1.LhuHB2ORFHP (98% identity) | CCANNNNGTC | M2.PspZM23ORF6590P |
| 6600 | S | S.LhuHB2ORFHP (100% identity) | S.PspZM23ORF6590P | |
| 6605 | protein kinase | |||
| 16310 | DNA topoisomerase III | |||
| 16315 | M | M.Csp24ORF29915P (97% identity) | M.PspZM23ORF16315P | |
| 16320 | 185 aa hypothetical protein | |||
| 16955 | 73 aa hypothetical protein | |||
| 16960 | M | M.PaeZU31ORF17575P (89% identity) | M1.PspZM23ORF16960P | |
| 16965 | M | M.PmuPopORF14550P (70% identity) | M2.PspZM23ORF16960P | |
| 16970 | 109 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 10685 | ATP-binding domain-containing protein | |||
| 10690 | M | M.Ecoww7ORF23780P (71% identity) | M.PspZM23ORF10690P | |
| 10695 | R | RarCa6ORF660P (94% identity) | PspZM23ORF10690P | |
| 10700 | AlpA family transcriptional regulator | |||
| 23720 | 47 aa hypothetical protein | |||
| 23725 | R | Xve35837ORF17700P (97% identity) | PspZM23ORF23730P | |
| 23730 | M | M.Xho305ORF15855P (89% identity) | M.PspZM23ORF23730P | |
| 23735 | RNA-directed DNA polymerase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 12760 | nucleobase:cation symporter-2 family protein | |||
| 12765 | R | BmuCF2ORF1627P (43% identity) | PspZM23ORF12765P | |
| 12770 | endonuclease/exonuclease/phosphatase family | |||
| 20590 | DEAD/DEAH box helicase family protein | |||
| 20595 | R | Pto022GmrSDP (74% identity) | PspZM23GmrSDP | |
| 20600 | 274 aa hypothetical protein | |||