Clostridium species LQ25 |
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Putative Clostridium species LQ25 RM systems
Ref: Liu,H. unpublished
REBASE ref # 29250
| Sequence length: | GenBank #: | |
| chromosome 1: | 3,814,771 bp | CP111077 |
| chromosome 2: | 762,385 bp | CP111078 |
REBASE acronym: CspLQ25
Org_num: 63356
All begin ONV75_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 16505 | PC4/YdbC family ssDNA-binding protein | |||
| 16510 | R | Cpa373ORF2770P (78% identity) | RAACNNNNNTGG | CspLQ25IP |
| 16515 | 196 aa hypothetical protein | |||
| 16520 | S | S1.FprORF13100P (59% identity) | RAACNNNNNTGG | S3.CspLQ25I |
| 16525 | tyrosine-type recombinase/integrase | |||
| 16530 | S | S3.PmeBin234ORFFP (30% identity) | S2.CspLQ25IP | |
| 16535 | S | S.Sci01ORF2890P (21% identity) | S1.CspLQ25IP | |
| 16540 | M | M.CspCT4ORF6465P (85% identity) | RAACNNNNNTGG | M.CspLQ25I |
| 16545 | 142 aa hypothetical protein | |||
| 16575 | 281 aa hypothetical protein | |||
| 16580 | M | M.CboV73ORF8460P (52% identity) | M.CspLQ25ORF16580P | |
| 16585 | 175 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 1675 | sugar phosphate nucleotidyltransferase | |||
| 1680 | M | M.Bto190ORF4705P (65% identity) | M.CspLQ25ORF1680P | |
| 1685 | 313 aa hypothetical protein | |||
| 1690 | R | R2.Bto190ORF4705P (66% identity) | CspLQ25ORF1680P | |
| 1695 | 113 aa hypothetical protein | |||
| 8830 | 174 aa hypothetical protein | |||
| 8835 | M | M.Csp62FORF773P (100% identity) | M.CspLQ25ORF8835P | |
| 8840 | 92 aa hypothetical protein | |||
| 16175 | 62 aa hypothetical protein | |||
| 16180 | M | M.DhaDHORF23590P (98% identity) | M.CspLQ25ORF16180P | |
| 16185 | 112 aa hypothetical protein | |||
| chromosome 2 | ||||
| 18625 | superoxide dismutase | |||
| 18630 | M | M.Cbu51208ORF4029P (100% identity) | GCTNAGC | M.CspLQ25ORF18630P |
| 18635 | R | CboCBUTORF19370P (100% identity) | GCTNAGC | CspLQ25ORF18630P |
| 18640 | 65 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 7765 | class I SAM-dependent methyltransferase | |||
| 7770 | R | CbuWQ1ORF11110P (98% identity) | CspLQ25ORF7770P | |
| 7775 | cell wall-binding protein | |||