Bifidobacterium species SKU |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Bifidobacterium species SKU RM systems
Ref: Song,Y. et al. unpublished
REBASE ref # 35522
Complete sequence: 2,245,486 bp
GenBank #: CP092890
REBASE acronym: BspSKU
Org_num: 62840
All begin MMB49_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 5655 | argininosuccinate lyase | |||
| 5660 | R | BspTKUORF5680P (100% identity) | BspSKUORF5675P | |
| 5665 | DNA binding domain-containing protein | |||
| 5670 | S | S1.BspTKUORF5680P (100% identity) | S1.BspSKUORF5675P | |
| 5675 | M | M.BspTKUORF5680P (100% identity) | M.BspSKUORF5675P | |
| 5680 | GIY-YIG nuclease family protein | |||
| 5685 | S | S2.BbiVSI20ORF5715P (96% identity) | S2.BspSKUORF5675P | |
| 5690 | site-specific integrase | |||
| 5695 | S | S2.BspTKUORF5680P (39% identity) | S3.BspSKUORF5675P | |
| 5700 | argininosuccinate synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1740 | type II toxin-antitoxin system RelB/DinJ family | |||
| 1745 | M | M.BspTKUORF1745P (100% identity) | TCCGGA | M.BspSKUORF1745P |
| 1750 | R | BspTKUORF1745P (100% identity) | TCCGGA | BspSKUORF1745P |
| 1755 | type II toxin-antitoxin system RelB/DinJ family | |||
| 2870 | class I SAM-dependent methyltransferase | |||
| 2875 | R | PmeBin303ORFBP (100% identity) | C | BspSKUORF2875P |
| 2880 | GTPase HflX | |||
| 3600 | site-specific integrase | |||
| 3605 | M | M.PmeBin303ORFDP (100% identity) | CTCGAG | M.BspSKUORF3605P |
| 3610 | R | PmeBin303ORFDP (100% identity) | CTCGAG | BspSKUORF3605P |
| 3615 | GIY-YIG nuclease family protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4555 | AAA family ATPase | |||
| 4560 | R | BspTKUORF4570P (100% identity) | BspSKUORF4565P | |
| 4565 | M | M.BspTKUORF4570P (100% identity) | M.BspSKUORF4565P | |
| 4570 | DUF4391 domain-containing protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 610 | 77 aa hypothetical protein | |||
| 615 | R | BspTKUORF615P (100% identity) | BspSKUORF615P | |
| 620 | (deoxy)nucleoside triphosphate | |||