Bifidobacterium species TKU |
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Putative Bifidobacterium species TKU RM systems
Ref: Song,Y. et al. unpublished
REBASE ref # 35522
Complete sequence: 2,245,497 bp
GenBank #: CP092889
REBASE acronym: BspTKU
Org_num: 62841
All begin MF599_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 5660 | argininosuccinate lyase | |||
| 5665 | R | BspSKUORF5675P (100% identity) | BspTKUORF5680P | |
| 5670 | DNA binding domain-containing protein | |||
| 5675 | S | S1.BspSKUORF5675P (100% identity) | S1.BspTKUORF5680P | |
| 5680 | M | M.BspSKUORF5675P (100% identity) | M.BspTKUORF5680P | |
| 5685 | GIY-YIG nuclease family protein | |||
| 5690 | S | S.BbiPRI1ORFEP (58% identity) | S2.BspTKUORF5680P | |
| 5695 | site-specific integrase | |||
| 5700 | S | S2.BspSKUORF5675P (34% identity) | S3.BspTKUORF5680P | |
| 5705 | argininosuccinate synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1740 | type II toxin-antitoxin system RelB/DinJ family | |||
| 1745 | M | M.BspSKUORF1745P (100% identity) | TCCGGA | M.BspTKUORF1745P |
| 1750 | R | BspSKUORF1745P (100% identity) | TCCGGA | BspTKUORF1745P |
| 1755 | type II toxin-antitoxin system RelB/DinJ family | |||
| 2870 | class I SAM-dependent methyltransferase | |||
| 2875 | R | PmeBin303ORFBP (100% identity) | C | BspTKUORF2875P |
| 2880 | GTPase HflX | |||
| 3600 | site-specific integrase | |||
| 3605 | M | M.PmeBin303ORFDP (100% identity) | CTCGAG | M.BspTKUORF3605P |
| 3610 | R | PmeBin303ORFDP (100% identity) | CTCGAG | BspTKUORF3605P |
| 3615 | GIY-YIG nuclease family protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4560 | AAA family ATPase | |||
| 4565 | R | BspSKUORF4565P (100% identity) | BspTKUORF4570P | |
| 4570 | M | M.BspSKUORF4565P (100% identity) | M.BspTKUORF4570P | |
| 4575 | DUF4391 domain-containing protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 610 | 77 aa hypothetical protein | |||
| 615 | R | BspSKUORF615P (100% identity) | BspTKUORF615P | |
| 620 | (deoxy)nucleoside triphosphate | |||