Escherichia coli EC488 |
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Putative Escherichia coli EC488 RM systems
Ref: He,X. unpublished
REBASE ref # 30080
| Sequence length: | GenBank #: | |
| Chromosome: | 5,173,170 bp | CP109874 |
| plasmid pEC488-1: | 133,748 bp | CP109875 |
| plasmid pEC488-3: | 70,018 bp | CP109877 |
| plasmid pEC488-4: | 49,150 bp | CP109878 |
| plasmid pEC488-KPC-2: | 126,200 bp | CP109876 |
REBASE acronym: EcoEC488
Org_num: 62907
All begin NQ150_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 10030 | IS3 family transposase | |||
| 10035 | M | M.Ecos142ORF9685P (100% identity) | GATGNNNNNNTAC | M.EcoEC488ORF10035P |
| 10040 | S | S.Ecos142ORF9685P (100% identity) | GATGNNNNNNTAC | S.EcoEC488ORF10035P |
| 10045 | YecA family protein | |||
| 10050 | cold shock domain-containing protein | |||
| 10055 | R | Ecos142ORF9685P (100% identity) | GATGNNNNNNTAC | EcoEC488ORF10035P |
| 10060 | M48 family metallopeptidase | |||
| 20700 | adenine/cytosine-specific restriction | |||
| 20705 | R | Ecoo241ORF21620P (99% identity) | AACNNNNNNGTGC | EcoEC488ORF20710P |
| 20710 | M | M.Ecos69ORF1130P (100% identity) | AACNNNNNNGTGC | M.EcoEC488ORF20710P |
| 20715 | S | S.Ecos69ORF1130P (100% identity) | AACNNNNNNGTGC | S.EcoEC488ORF20710P |
| 20720 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1760 | cell division protein DamX | |||
| 1765 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoEC488DamP |
| 1770 | ribulose-phosphate 3-epimerase | |||
| 2290 | DUF2556 family protein | |||
| 2295 | M | M.Ecos142ORF2405P (100% identity) | ATGCAT | M.EcoEC488ORF2295P |
| 2300 | DNA-binding transcriptional regulator Fis | |||
| 6465 | DUF1382 family protein | |||
| 6470 | M | M.SspPIBORF6330P (100% identity) | GATC | M.EcoEC488ORF6470P |
| 6475 | PerC family transcriptional regulator | |||
| 9770 | phosphohydrolase | |||
| 9775 | M | M.Ecos142DcmP (100% identity) | CCWGG | M.EcoEC488DcmP |
| 9780 | V | V.Ecos142DcmP (100% identity) | V.EcoEC488DcmP | |
| 9785 | drug/metabolite exporter YedA | |||
| 13555 | 39 aa hypothetical protein | |||
| 13575 | M | M.SsoCS14ORF10750P (100% identity) | A | M.EcoEC488ORF13575P |
| 13580 | TrmB family transcriptional regulator | |||
| plasmid pEC488-1 | ||||
| 25630 | 73 aa hypothetical protein | |||
| 25635 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoEC488ORF25635P |
| 25640 | 103 aa hypothetical protein | |||
| plasmid pEC488-3 | ||||
| 26655 | 97 aa hypothetical protein | |||
| 26660 | M | M.Eco110019ORFJP (100% identity) | M.EcoEC488ORF26660P | |
| 26665 | 73 aa hypothetical protein | |||
| plasmid pEC488-4 | ||||
| 27115 | 89 aa hypothetical protein | |||
| 27120 | M | M.EcoZLWTORF24570P (100% identity) | GATC | M.EcoEC488ORF27120P |
| 27130 | 92 aa hypothetical protein | |||
| plasmid pEC488-KPC-2 | ||||
| 25940 | 103 aa hypothetical protein | |||
| 25945 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoEC488ORF25945P |
| 25950 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20695 | GTPase | |||
| 20700 | R | Ssp28760MrrP (100% identity) | EcoEC488MrrP | |
| 20705 | type I restriction-modification system | |||
| 20720 | endoribonuclease SymE | |||
| 20725 | R | SenHNK130McrBP (100% identity) | EcoEC488McrBP | |
| 20730 | R | SenHNK130McrCP (100% identity) | EcoEC488McrCP | |