Citrobacter freundii CF20-4P-1 |
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Putative Citrobacter freundii CF20-4P-1 RM systems
Ref: Nakayama,T. et al. unpublished
REBASE ref # 35473
| Sequence length: | GenBank #: | |
| Chromosome: | 4,907,659 bp | AP026940 |
| plasmid pCF20-4P-1-1: | 293,280 bp | AP026941 |
| plasmid pCF20-4P-1-2: | 137,080 bp | AP026942 |
| plasmid pCF20-4P-1-3: | 108,861 bp | AP026943 |
REBASE acronym: Cfr4P1
Org_num: 62704
All begin CF204P1_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 39520 | 883 aa hypothetical protein | |||
| 39530 | R | Csp986ORF20575P (97% identity) | Cfr4P1ORF39550P | |
| 39540 | S | S.Ero309ORF20880P (55% identity) | S1.Cfr4P1ORF39550P | |
| 39550 | M | M.CfrB38IV (95% identity) | M.Cfr4P1ORF39550P | |
| 39560 | S | S2.Kpntgc02ORF6515P (65% identity) | S2.Cfr4P1ORF39550P | |
| 39570 | integrase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3230 | cell division protein DamX | |||
| 3240 | M | M.Eco5172DamP (100% identity) | GATC | M.Cfr4P1DamP |
| 3250 | ribulose-phosphate 3-epimerase | |||
| 4230 | acrEF/envCD operon transcriptional regulator | |||
| 4240 | M | M.Cfr449ORF2175P (100% identity) | ATGCAT | M.Cfr4P1ORF4240P |
| 4250 | DNA-binding protein Fis | |||
| 17920 | phosphohydrolase | |||
| 17930 | M | M.CfrHM38III (97% identity) | CCWGG | M.Cfr4P1DcmP |
| 17940 | V | V.CspS39ORF13780P (100% identity) | CCWGG | V.Cfr4P1DcmP |
| 17950 | drug/metabolite exporter YedA | |||
| 27130 | 45 aa hypothetical protein | |||
| 27140 | M | M.EcoFP2ORF26065P (37% identity) | M.Cfr4P1ORF27140P | |
| 27150 | 382 aa hypothetical protein | |||
| plasmid pCF20-4P-1-1 | ||||
| 45940 | IS6 family transposase | |||
| 45950 | R | YpsR2ORFAP (100% identity) | CCWGG | Cfr4P1ORF45960P |
| 45960 | M | M.YpsR2ORFAP (100% identity) | CCWGG | M.Cfr4P1ORF45960P |
| 45970 | IS110 family transposase | |||
| 46650 | DNA polymerase III subunit beta | |||
| 46660 | M | M.Sen3039ORF24445P (100% identity) | GATC | M.Cfr4P1ORF46660P |
| 46670 | 76 aa hypothetical protein | |||
| plasmid pCF20-4P-1-2 | ||||
| 50250 | 100 aa hypothetical protein | |||
| 50260 | M | M.YrupYR1ORFCP (100% identity) | CCNGG | M.Cfr4P1ORF50260P |
| 50270 | 143 aa hypothetical protein | |||
| plasmid pCF20-4P-1-3 | ||||
| 51820 | 76 aa hypothetical protein | |||
| 51830 | M | M.SphSSU5ORF88P (99% identity) | M.Cfr4P1ORF51830P | |
| 51840 | 280 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pCF20-4P-1-3 | ||||
| 50800 | 228 aa hypothetical protein | |||
| 50810 | M | M.Vpe15641ORFDP (100% identity) | M.Cfr4P1ORF50810P | |
| 50820 | R | Vch702ORFAP (99% identity) | Cfr4P1ORF50810P | |
| 50830 | 779 aa hypothetical protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 43630 | 59 aa hypothetical protein | |||
| 43640 | M | M.Ero523ORF16330P (100% identity) | M.Cfr4P1ORF43640P | |
| 43650 | 70 aa hypothetical protein | |||