Salmonella species 3C |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Salmonella species 3C RM systems
Ref: Wang,Y.-Q. unpublished
REBASE ref # 35184
| Sequence length: | GenBank #: | |
| Chromosome: | 4,840,545 bp | CP104858 |
| plasmid pTL-1: | 45,301 bp | CP104860 |
REBASE acronym: Ssp3C
Org_num: 62313
All begin N7E69_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 11535 | endonuclease NucS | |||
| 11540 | R | SenRM111ORF20445P (100% identity) | Ssp3CORF11555P | |
| ??? | S | S.SenSDORF4786P (100% identity) | GGYANNNNNNTCG | S1.Ssp3CORF11555P |
| 11555 | M | M.StySBLI (100% identity) | M.Ssp3CORF11555P | |
| 11560 | restriction endonuclease | |||
| 11565 | 44 aa hypothetical protein | |||
| 11570 | SAM-dependent methyltransferase | |||
| 11575 | S | S2.SenS266ORF20070P (100% identity) | S2.Ssp3CORF11555P | |
| 11580 | NERD domain-containing protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2825 | replication endonuclease | |||
| 2830 | M | M.Ssp8103ORF5415P (100% identity) | GATC | M.Ssp3CORF2830P |
| 2835 | TraR/DksA family transcriptional regulator | |||
| 6005 | DNA-binding transcriptional regulator Fis | |||
| 6010 | M | M.StyUK1III (100% identity) | ATGCAT | M.Ssp3CORF6010P |
| 6015 | DUF2556 family protein | |||
| 6495 | ribulose-phosphate 3-epimerase | |||
| 6500 | M | M.StyTDamP (100% identity) | GATC | M.Ssp3CDamP |
| 6505 | cell division protein DamX | |||
| 11415 | IS3 family transposase | |||
| 11420 | R | SspSAL045ORF19515P (100% identity) | GAAC | Ssp3CORF11420P |
| 11425 | YebC/PmpR family DNA-binding transcriptional | |||
| 17120 | ead/Ea22-like family protein | |||
| 17125 | M | M.SenSDORF1060P (100% identity) | M.Ssp3CORF17125P | |
| 17130 | DUF550 domain-containing protein | |||
| 17905 | phosphohydrolase | |||
| 17910 | M | M.SenSDORF1217P (100% identity) | CCWGG | M.Ssp3CDcmP |
| 17915 | V | V.StyUK1DcmP (100% identity) | CCWGG | V.Ssp3CDcmP |
| 17920 | drug/metabolite exporter YedA | |||
| 22820 | RusA family crossover junction | |||
| 22825 | M | M.SenSDORF2213P (100% identity) | GATC | M.Ssp3CORF22825P |
| 22830 | PerC family transcriptional regulator | |||
| plasmid pTL-1 | ||||
| 24380 | recombinase family protein | |||
| 24385 | R | Sso29930ORFDP (100% identity) | CCWGG | Ssp3CORF24390P |
| 24390 | M | M.Ubap201ORF4P (100% identity) | CCWGG | M.Ssp3CORF24390P |
| 24395 | IS1 family transposase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 13755 | MFS transporter | |||
| 13760 | M | M.StyUK1I (100% identity) | CAGAG | M.Ssp3CORF13760P |
| 13765 | R | SenSDORF379P (99% identity) | CAGAG | Ssp3CORF13760P |
| 13770 | small effector SsaA | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 11555 | type I restriction-modification system subunit | |||
| 11560 | R | SenSEJMrrP (100% identity) | Ssp3CMrrP | |
| 11565 | 44 aa hypothetical protein | |||