Escherichia coli E3 |
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Putative Escherichia coli E3 RM systems
Ref: Feng,A. et al. unpublished
REBASE ref # 35294
| Sequence length: | GenBank #: | |
| Chromosome: | 4,700,637 bp | CP104536 |
| plasmid p1: | 109,755 bp | CP104537 |
REBASE acronym: EcoE3
Org_num: 61958
All begin N5O72_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| plasmid p1 | ||||
| 23025 | chromosome segregation protein SMC | |||
| 23030 | M | M.SenS1545ORF24780P (100% identity) | M.EcoE3ORF23030P | |
| 23035 | R | SenS1545ORF24780P (100% identity) | EcoE3ORF23030P | |
| 23040 | 62 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1680 | cell division protein DamX | |||
| 1685 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoE3DamP |
| 1690 | ribulose-phosphate 3-epimerase | |||
| 2305 | DUF2556 family protein | |||
| 2310 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.EcoE3ORF2310P |
| 2315 | site-specific integrase | |||
| 7800 | transcriptional regulator | |||
| 7805 | M | M.EcoVEV10FORF15720P (100% identity) | M.EcoE3ORF7805P | |
| 7810 | 89 aa hypothetical protein | |||
| 9005 | phosphohydrolase | |||
| 9010 | M | M.SflSTLE1DcmP (100% identity) | CCWGG | M.EcoE3DcmP |
| 9015 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.EcoE3DcmP |
| 9020 | drug/metabolite exporter YedA | |||
| 14340 | 273 aa hypothetical protein | |||
| 14345 | M | M.EcoO78ORF7950P (100% identity) | GATC | M.EcoE3ORF14345P |
| 14350 | TraR/DksA family transcriptional regulator | |||
| 16080 | PerC family transcriptional regulator | |||
| 16085 | M | M.Sso90ORF15820P (100% identity) | GATC | M.EcoE3ORF16085P |
| 16090 | LexA family transcriptional regulator | |||
| 16120 | 67 aa hypothetical protein | |||
| 16125 | M | M.EcoNC22ORF10915P (100% identity) | M.EcoE3ORF16125P | |
| 16130 | class II holin family protein | |||
| 19370 | McrC family protein | |||
| 19375 | R | EcosS9ORF2810P (99% identity) | GGTCTC | EcoE3ORF19380P |
| 19380 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoE3ORF19380P |
| 19385 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoE3ORF19380P |
| 19390 | IS21-like element ISEc12 family helper ATPase | |||
| 21550 | phage portal protein | |||
| 21555 | M | M.Ecos641ORF25P (99% identity) | M.EcoE3ORF21555P | |
| 21560 | 318 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 7875 | recombinase family protein | |||
| 7880 | R | Ecochi7122GmrSDP (100% identity) | EcoE3GmrSDP | |
| 7885 | IS3-like element IS2 family transposase | |||
| 19360 | glycosyltransferase | |||
| 19365 | R | EcosS3McrBP (100% identity) | EcoE3McrBP | |
| 19370 | R | EcosS9McrCP (100% identity) | EcoE3McrCP | |
| 19375 | Alw26I/Eco31I/Esp3I family type II restriction | |||