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Putative Streptococcus suis ISU2912 RM systems
Ref: Nicholson,T.L. et al. unpublished
REBASE ref # 20989
Complete sequence: 2,720,381 bp
GenBank #: CP017785
REBASE acronym: Ssu2912
Org_num: 17561
All begin A7J10_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
410 | DEAD/DEAH box helicase | |||
415 | S | S3.Ssu4ORF3320P (66% identity) | S2.Ssu2912ORF430P | |
420 | cell filamentation protein Fic | |||
425 | S | S3.SsuYZDH1ORF2625P (43% identity) | S1.Ssu2912ORF430P | |
430 | M | M.SsuMA4ORFJP (99% identity) | M.Ssu2912ORF430P | |
435 | serine--tRNA ligase | |||
2505 | 71 aa hypothetical protein | |||
??? | M | M.SsuS11ORF4005P (89% identity) | M.Ssu2912ORF2510P | |
2520 | 141 aa hypothetical protein | |||
5475 | 210 aa hypothetical protein | |||
5480 | S | S.SsaVT517ORF730P (47% identity) | S.Ssu2912ORF10705P | |
5485 | M | M.SsuSs109ORF1830P (99% identity) | M.Ssu2912ORF10705P | |
5490 | R | SsucSS389ORF5280P (95% identity) | Ssu2912ORF10705P | |
5495 | pyridine nucleotide-disulfide oxidoreductase | |||
9545 | threonine synthase | |||
9550 | R | Ssu17ORF1675P (98% identity) | Ssu2912ORF8540P | |
9555 | anticodon nuclease | |||
9560 | S | S3.SsuMA4ORFEP (84% identity) | S2.Ssu2912ORF8540P | |
9565 | S | S1.SsuC2ORF1555P (94% identity) | S1.Ssu2912ORF8540P | |
9570 | cell filamentation protein Fic | |||
9575 | M | M.SsuC2ORF1555P (99% identity) | M.Ssu2912ORF8540P | |
9580 | bifunctional acetaldehyde-CoA/alcohol | |||
10985 | IS4 family transposase | |||
10990 | R | Ssu1112SORF9435P (65% identity) | Ssu2912ORF10995P | |
10995 | S | S4.SsuDNR43ORF9145P (98% identity) | S.Ssu2912ORF10995P | |
11000 | site-specific integrase | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
1295 | DEAD/DEAH box helicase | |||
1300 | M | M.SsuAKJ18ORF9080P (100% identity) | ACGT | M.Ssu2912ORF1300P |
1305 | R | SsuLS9NORFFP (99% identity) | ACGT | Ssu2912ORF1300P |
1310 | 313 aa hypothetical protein | |||
3865 | 102 aa hypothetical protein | |||
3870 | M | M2.SsuSs48ORF4250P (96% identity) | M.Ssu2912ORF3870P | |
3875 | 109 aa hypothetical protein | |||
3910 | 135 aa hypothetical protein | |||
3920 | M | M.SspHN38ORFJP (98% identity) | M.Ssu2912ORF3920P | |
3925 | 123 aa hypothetical protein | |||
5220 | DNA topoisomerase IV subunit A | |||
5225 | S | S2.HpaSH03ORF4015P (38% identity) | S1.Ssu2912ORF9965P | |
5235 | RM | SsuAKJ18ORF5795P (99% identity) | Ssu2912ORF9965P | |
5240 | GTP pyrophosphokinase | |||
5875 | 142 aa hypothetical protein | |||
5880 | M | M.SsuYS77ORFEP (98% identity) | M.Ssu2912ORF595P | |
5885 | replication initiator protein | |||
7645 | 114 aa hypothetical protein | |||
7650 | M | M1.SsuSs48ORF4250P (96% identity) | M.Ssu2912ORF11720P | |
7655 | 77 aa hypothetical protein | |||
9210 | 79 aa hypothetical protein | |||
9215 | M | M.Ssu2812ORF3780P (93% identity) | GATC | M.Ssu2912ORF3265P |
9220 | 694 aa hypothetical protein | |||
11150 | X-Pro aminopeptidase | |||
11155 | R | Ssu1112SORF9630P (95% identity) | GATC | Ssu2912ORF1000P |
11160 | M | M2.SsuS26ORF2155P (98% identity) | GATC | M1.Ssu2912ORF1000P |
11165 | M | M2.SsuAKJ18ORF10075P (98% identity) | GATC | M2.Ssu2912ORF1000P |
11170 | 448 aa hypothetical protein | |||
12190 | 16S rRNA | |||
12195 | M | M.SsuFJSM5ORF11905P (100% identity) | M.Ssu2912ORF8330P | |
12200 | 559 aa hypothetical protein | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
6685 | 249 aa hypothetical protein | |||
6690 | R | SsuYZDH1ORF4185P (98% identity) | Ssu2912ORF3455P | |
6695 | 167 aa hypothetical protein | |||
6700 | 132 aa hypothetical protein | |||
6705 | M | M.SmiB6ORF1249P (71% identity) | M.Ssu2912ORF3455P | |
6710 | 80 aa hypothetical protein | |||
Type IV | ||||
ORF | Gene | Most similar | Specificity | Name |
4595 | glutamine-hydrolyzing GMP synthase | |||
4600 | R | SsuAKJ18McrCP (99% identity) | Ssu2912McrCP | |
4605 | R | SsuC90McrBP (96% identity) | Ssu2912McrBP | |
4610 | 262 aa hypothetical protein | |||
Orphan M | ||||
ORF | Gene | Most similar | Specificity | Name |
965 | 73 aa hypothetical protein | |||
970 | M | M.SsuYS77ORFKP (100% identity) | M.Ssu2912ORF970P | |
975 | 86 aa hypothetical protein |