Escherichia coli O157:H7 380-94 |
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Putative Escherichia coli O157:H7 380-94 RM systems
Ref: Chen,C.-Y. et al. unpublished
REBASE ref # 35259
Complete sequence: 5,442,784 bp
GenBank #: CP104309
REBASE acronym: Eco38094
Org_num: 61789
All begin NUE46_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 23765 | DUF262 domain-containing protein | |||
| 23770 | R | Ecos1613ORF27060P (100% identity) | CACNNNNNNNCTGG | Eco38094ORF23775P |
| 23775 | M | M.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | M.Eco38094ORF23775P |
| 23780 | S | S.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | S.Eco38094ORF23775P |
| 23785 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2075 | cell division protein DamX | |||
| 2080 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco38094DamP |
| 2085 | ribulose-phosphate 3-epimerase | |||
| 2590 | DUF2556 family protein | |||
| 2595 | M | M.EcosPA8ORF11510P (100% identity) | ATGCAT | M.Eco38094ORF2595P |
| 2600 | DNA-binding transcriptional regulator Fis | |||
| 8525 | recombination protein NinB | |||
| 8530 | M | M.Eph2851ORFAP (100% identity) | GATC | M.Eco38094ORF8530P |
| 8535 | NinE family protein | |||
| 9905 | phosphohydrolase | |||
| 9910 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.Eco38094DcmP |
| 9915 | V | V.EcosPA8DcmP (100% identity) | CCWGG | V.Eco38094DcmP |
| 9920 | drug/metabolite exporter YedA | |||
| 13030 | 35 aa hypothetical protein | |||
| 13035 | M | M.Ecos15739ORF2910P (100% identity) | M.Eco38094ORF13035P | |
| 13040 | 329 aa hypothetical protein | |||
| 13045 | R | Ecos15739ORF2910P (100% identity) | Eco38094ORF13035P | |
| 13050 | DUF1367 family protein | |||
| 14220 | DUF1737 domain-containing protein | |||
| 14235 | M | M.EcosPA8ORF27255P (100% identity) | M.Eco38094ORF14235P | |
| 14240 | TrmB family transcriptional regulator | |||
| 17140 | NinE family protein | |||
| 17145 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.Eco38094ORF17145P |
| 17150 | recombination protein NinB | |||
| 24000 | RM | EcosPA8ORF17390P (100% identity) | GAAABCC | Eco38094ORF24000P |
| 24005 | DEAD/DEAH box helicase | |||
| 24035 | N-acetylneuraminic acid mutarotase | |||
| 24040 | R | Ecos1613ORF26795P (100% identity) | Eco38094ORF24040P | |
| 24045 | transposase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 23785 | endoribonuclease SymE | |||
| 23790 | R | EcosPA8GmrSDP (55% identity) | Eco38094GmrDP | |
| 23795 | R | Ecos1613GmrSP (100% identity) | Eco38094GmrSP | |
| 23800 | cytoplasmic protein | |||