Escherichia coli USDA-ARS-USMARC-51408 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli USDA-ARS-USMARC-51408 RM systems
Ref: Harhay,D.M. et al. unpublished
REBASE ref # 35176
| Sequence length: | GenBank #: | |
| Chromosome: | 4,705,478 bp | CP104114 |
| plasmid pEc1-51408: | 194,998 bp | CP104115 |
| plasmid pEc2-51408: | 112,587 bp | CP104116 |
REBASE acronym: Eco51408
Org_num: 61572
All begin N1706_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3035 | endoribonuclease SymE | |||
| 3040 | R | EcoR31ORF16485P (100% identity) | CGTANNNNNGTC | Eco51408ORF3050P |
| 3045 | S | S.EcoSH3ORF25175P (99% identity) | CGTANNNNNGTC | S.Eco51408ORF3050P |
| 3050 | M | M.Esp9308ORFIP (100% identity) | CGTANNNNNGTC | M.Eco51408ORF3050P |
| 3055 | restriction endonuclease | |||
| plasmid pEc2-51408 | ||||
| 23860 | 158 aa hypothetical protein | |||
| 23865 | R | EcoPM7ORF22985P (100% identity) | Eco51408ORF23875P | |
| 23870 | S | S.EcoPM7ORF22985P (100% identity) | S.Eco51408ORF23875P | |
| 23875 | M | M.EcoPM7ORF22985P (100% identity) | M.Eco51408ORF23875P | |
| 23880 | DNA polymerase III subunit theta | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1670 | 8-oxoguanine DNA glycosylase | |||
| 1675 | M | M.Kva353ORF26235P (84% identity) | M.Eco51408ORF1675P | |
| 1680 | anti-phage deoxyguanosine triphosphatase | |||
| 11685 | 95 aa hypothetical protein | |||
| 11690 | M | M.SsoSE61ORF20220P (100% identity) | M.Eco51408ORF11690P | |
| 11695 | DUF977 family protein | |||
| 13705 | drug/metabolite exporter YedA | |||
| 13710 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.Eco51408DcmP |
| 13715 | M | M.SsoSE61DcmP (100% identity) | CCWGG | M.Eco51408DcmP |
| 13720 | phosphohydrolase | |||
| 20190 | DNA-binding transcriptional regulator Fis | |||
| 20195 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.Eco51408ORF20195P |
| 20200 | DUF2556 family protein | |||
| 20815 | ribulose-phosphate 3-epimerase | |||
| 20820 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco51408DamP |
| 20825 | cell division protein DamX | |||
| plasmid pEc1-51408 | ||||
| 23630 | 143 aa hypothetical protein | |||
| 23635 | M | M.YrupYR1ORFCP (100% identity) | CCNGG | M.Eco51408ORF23635P |
| 23640 | 100 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3050 | type I restriction-modification system subunit | |||
| 3055 | R | EfeE4C07MrrP (100% identity) | Eco51408MrrP | |
| 3060 | BrnT family toxin | |||
| 9410 | site-specific DNA recombinase | |||
| 9415 | R | SsoSE61ORF22640P (100% identity) | YCGR | Eco51408ORF9415P |
| 9420 | isocitrate/isopropylmalate family dehydrogenase | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pEc2-51408 | ||||
| 23815 | 269 aa hypothetical protein | |||
| 23820 | M | M.Sso524ORF460P (100% identity) | GATC | M.Eco51408ORF23820P |
| 23825 | 76 aa hypothetical protein | |||