Clostridioides difficile SH |
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Putative Clostridioides difficile SH RM systems
Ref: Su,T. et al. unpublished
REBASE ref # 35148
| Sequence length: | GenBank #: | |
| Chromosome: | 4,238,824 bp | CP081017 |
| plasmid pSH: | 48,615 bp | CP081018 |
REBASE acronym: CdiSH
Org_num: 61397
All begin K2217_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 15845 | DUF262 domain-containing HNH endonuclease family | |||
| 15850 | R | PdiBJ08ORFBP (100% identity) | TAGNNNNNRTGAA | CdiSHORF15875P |
| 15855 | 142 aa hypothetical protein | |||
| 15860 | nucleotidyltransferase domain-containing | |||
| 15865 | 102 aa hypothetical protein | |||
| 15870 | S | S.PdiBJ08ORFBP (100% identity) | TAGNNNNNRTGAA | S.CdiSHORF15875P |
| 15875 | M | M.PdiBJ08ORFBP (100% identity) | TAGNNNNNRTGAA | M.CdiSHORF15875P |
| 15880 | tagatose-bisphosphate aldolase subunit GatY | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 14535 | patatin-like phospholipase family protein | |||
| 14540 | M | M.PdiBJ08ORFCP (100% identity) | CAAAAA | M.CdiSHORF14540P |
| 14545 | Rrf2 family transcriptional regulator | |||
| plasmid pSH | ||||
| 19520 | BlaI/MecI/CopY family transcriptional regulator | |||
| 19525 | M | M.CdiT4ORF19985P (100% identity) | M.CdiSHORF19525P | |
| 19530 | N-acetylmuramoyl-L-alanine amidase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 11070 | sigma 54-interacting transcriptional regulator | |||
| 11075 | R | PdiBJ08McrCP (100% identity) | CdiSHMcrCP | |
| 11080 | R | PdiBJ08McrBP (100% identity) | CdiSHMcrBP | |
| 11085 | cell division protein | |||