Clostridioides difficile CD060 |
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Putative Clostridioides difficile CD060 RM systems
Ref: Su,T. et al. unpublished
REBASE ref # 35148
| Sequence length: | GenBank #: | |
| Chromosome: | 4,289,668 bp | CP081023 |
| plasmid pCD060: | 48,593 bp | CP081024 |
REBASE acronym: Cdi060
Org_num: 61392
All begin K2216_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 16645 | DUF262 domain-containing HNH endonuclease family | |||
| 16650 | R | PdiBJ08ORFBP (100% identity) | TAGNNNNNRTGAA | Cdi060ORF16675P |
| 16655 | 142 aa hypothetical protein | |||
| 16660 | nucleotidyltransferase domain-containing | |||
| 16665 | 102 aa hypothetical protein | |||
| 16670 | S | S.PdiBJ08ORFBP (100% identity) | TAGNNNNNRTGAA | S.Cdi060ORF16675P |
| 16675 | M | M.PdiBJ08ORFBP (100% identity) | TAGNNNNNRTGAA | M.Cdi060ORF16675P |
| 16680 | tagatose-bisphosphate aldolase subunit GatY | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 14390 | 73 aa hypothetical protein | |||
| 14395 | M | M.CdiS122ORF7470P (98% identity) | M.Cdi060ORF14395P | |
| 14400 | 54 aa hypothetical protein | |||
| 14920 | patatin-like phospholipase family protein | |||
| 14925 | M | M.PdiBJ08ORFCP (100% identity) | CAAAAA | M.Cdi060ORF14925P |
| 14930 | Rrf2 family transcriptional regulator | |||
| plasmid pCD060 | ||||
| 20080 | BlaI/MecI/CopY family transcriptional regulator | |||
| 20085 | M | M.CdiT4ORF19985P (100% identity) | M.Cdi060ORF20085P | |
| 20090 | N-acetylmuramoyl-L-alanine amidase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 10965 | sigma 54-interacting transcriptional regulator | |||
| 10970 | R | PdiBJ08McrCP (100% identity) | Cdi060McrCP | |
| 10975 | R | PdiBJ08McrBP (100% identity) | Cdi060McrBP | |
| 10980 | cell division protein | |||