Escherichia coli ST12468 |
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Putative Escherichia coli ST12468 RM systems
Ref: Shropshire,W.C. et al. mSystems (2022) In press
REBASE ref # 35163
| Sequence length: | GenBank #: | |
| Chromosome: | 4,653,505 bp | CP103694 |
| plasmid pMB3825A_2: | 114,012 bp | CP103696 |
REBASE acronym: Eco12468
Org_num: 61568
All begin M5T31_
| Type II | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1685 | cell division protein DamX | |||
| 1690 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco12468DamP |
| 1695 | ribulose-phosphate 3-epimerase | |||
| 2310 | DUF2556 family protein | |||
| 2315 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.Eco12468ORF2315P |
| 2320 | DNA-binding transcriptional regulator Fis | |||
| 6890 | recombination protein NinB | |||
| 6895 | M | M.EcoC2016ORF8940P (100% identity) | M.Eco12468ORF6895P | |
| 6900 | protein ninD | |||
| 8275 | 252 aa hypothetical protein | |||
| 8280 | R | EcoYSP81ORFBP (100% identity) | RCSRC | Eco12468ORF8280P |
| 8285 | transcription factor | |||
| 8860 | recombination protein NinB | |||
| 8865 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.Eco12468ORF8865P |
| 8870 | NinE family protein | |||
| 14785 | replication endonuclease | |||
| 14790 | M | M.EcoH58ORFCP (100% identity) | GATC | M.Eco12468ORF14790P |
| 14795 | TraR/DksA family transcriptional regulator | |||
| 19700 | sigma 54-interacting transcriptional regulator | |||
| 19705 | R | EcoPEC0011ORF2095P (100% identity) | Eco12468ORF19705P | |
| 19710 | IS3-like element IS911 family transposase | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4630 | 76 aa hypothetical protein | |||
| 4635 | M | M.Sso524ORF460P (100% identity) | GATC | M.Eco12468ORF4635P |
| 4640 | 269 aa hypothetical protein | |||
| 4730 | 76 aa hypothetical protein | |||
| 4735 | M | M.Sso524ORF460P (100% identity) | GATC | M.Eco12468ORF4735P |
| 4740 | 269 aa hypothetical protein | |||
| plasmid pMB3825A_2 | ||||
| 23990 | 76 aa hypothetical protein | |||
| 23995 | M | M.Sso524ORF460P (100% identity) | GATC | M.Eco12468ORF23995P |
| 24000 | 269 aa hypothetical protein | |||