Escherichia coli 5283 |
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Putative Escherichia coli 5283 RM systems
Ref: Shropshire,W.C. et al. mSystems (2022) In press
REBASE ref # 35163
| Sequence length: | GenBank #: | |
| Chromosome: | 5,116,939 bp | CP103762 |
| plasmid pMB9880_1: | 128,773 bp | CP103763 |
| plasmid pMB9880_2: | 97,212 bp | CP103764 |
| plasmid pMB9880_3: | 48,945 bp | CP103765 |
REBASE acronym: Eco5283
Org_num: 61533
All begin M5T11_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20805 | adenine/cytosine-specific restriction | |||
| 20810 | R | EcosS1ORF16790P (100% identity) | CCANNNNNNNCTTC | Eco5283ORF20815P |
| 20815 | M | M.EcosS1ORF16790P (100% identity) | CCANNNNNNNCTTC | M.Eco5283ORF20815P |
| 20820 | S | S.EcosS1ORF16790P (100% identity) | CCANNNNNNNCTTC | S.Eco5283ORF20815P |
| 20825 | endoribonuclease SymE | |||
| plasmid pMB9880_1 | ||||
| 25515 | IS1 family transposase | |||
| 25520 | R | EcosR11ORF25685P (100% identity) | CAAYNNNNNCTGG | Eco5283ORF25530P |
| 25525 | S | S.SenBR076ORFFP (100% identity) | CAAYNNNNNCTGG | S.Eco5283ORF25530P |
| 25530 | M | M.KpnKPA1ORF26345P (100% identity) | CAAYNNNNNCTGG | M.Eco5283ORF25530P |
| 25535 | type II toxin-antitoxin system Phd/YefM family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1840 | cell division protein DamX | |||
| 1845 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco5283DamP |
| 1850 | ribulose-phosphate 3-epimerase | |||
| 2370 | DUF2556 family protein | |||
| 2375 | M | M.EcosS1ORF18905P (100% identity) | ATGCAT | M.Eco5283ORF2375P |
| 2380 | DNA-binding transcriptional regulator Fis | |||
| 7345 | recombination protein NinB | |||
| 7350 | M | M.EcoWN4ORF7335P (100% identity) | GATC | M.Eco5283ORF7350P |
| 7355 | NinE family protein | |||
| 7650 | IS1 family transposase | |||
| 7655 | M | M.Sen7113ORF20540P (100% identity) | M.Eco5283ORF7655P | |
| 7660 | Com family DNA-binding transcriptional | |||
| 9815 | HD domain-containing protein | |||
| 9820 | M | M.SflSTLE3DcmP (100% identity) | CCWGG | M.Eco5283DcmP |
| 9825 | V | V.SflSTLE3DcmP (100% identity) | CCWGG | V.Eco5283DcmP |
| 9830 | drug/metabolite exporter YedA | |||
| plasmid pMB9880_1 | ||||
| 25420 | 73 aa hypothetical protein | |||
| 25425 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.Eco5283ORF25425P |
| 25430 | 103 aa hypothetical protein | |||
| plasmid pMB9880_2 | ||||
| 25945 | recombination-associated protein RdgC | |||
| 25950 | M | M.Eco9071ORF4866P (100% identity) | M.Eco5283ORF25950P | |
| 25965 | tellurite/colicin resistance protein | |||
| plasmid pMB9880_3 | ||||
| 26435 | 92 aa hypothetical protein | |||
| 26085 | M | M.Eco2779ORF26015P (100% identity) | M.Eco5283ORF26085P | |
| 26090 | 86 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20800 | GTPase | |||
| 20805 | R | EcosS1MrrP (100% identity) | Eco5283MrrP | |
| 20810 | type I restriction-modification system | |||