Escherichia coli XH987 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli XH987 RM systems
Ref: Wang,Y. et al. unpublished
REBASE ref # 35194
| Sequence length: | GenBank #: | |
| Chromosome: | 4,928,659 bp | CP102675 |
| plasmid pXH987-OQX: | 100,243 bp | CP102674 |
REBASE acronym: EcoXH987
Org_num: 61574
All begin NU950_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 11785 | restriction endonuclease | |||
| 11790 | M | M.EmaC12ORF11130P (100% identity) | CGAYNNNNNNNTTC | M.EcoXH987ORF11790P |
| 11795 | S | S.EcosEC21ORF19195P (100% identity) | CGAYNNNNNNNTTC | S.EcoXH987ORF11790P |
| 11800 | R | EcosEC21ORF19195P (100% identity) | CGAYNNNNNNNTTC | EcoXH987ORF11790P |
| 11805 | endoribonuclease SymE | |||
| 19695 | transposase | |||
| 19700 | R | SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | EcoXH987ORF19705P |
| 19705 | M | M.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | M.EcoXH987ORF19705P |
| 19710 | S | S.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | S.EcoXH987ORF19705P |
| 19715 | AAA family ATPase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4160 | DUF1367 family protein | |||
| 4165 | R | EcosEC21ORF11865P (100% identity) | GTCGAC | EcoXH987ORF4170P |
| 4170 | M | M.EcosEC21ORF11865P (99% identity) | M.EcoXH987ORF4170P | |
| 4175 | DUF977 family protein | |||
| 11565 | 73 aa hypothetical protein | |||
| 11570 | M | M.Ssp14523ORF22990P (100% identity) | M.EcoXH987ORF11570P | |
| 11575 | 103 aa hypothetical protein | |||
| 17275 | cell division protein DamX | |||
| 17280 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoXH987DamP |
| 17285 | ribulose-phosphate 3-epimerase | |||
| 17805 | DUF2556 family protein | |||
| 17810 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.EcoXH987ORF17810P |
| 17815 | DNA-binding transcriptional regulator Fis | |||
| 25230 | HD domain-containing protein | |||
| 25235 | M | M.SflN107DcmP (100% identity) | CCWGG | M.EcoXH987DcmP |
| 25240 | V | V.SflN107DcmP (100% identity) | V.EcoXH987DcmP | |
| 25245 | drug/metabolite exporter YedA | |||
| plasmid pXH987-OQX | ||||
| 1445 | IS21-like element IS100kyp family helper ATPase | |||
| 1450 | M | M.EcoXH989ORF1535P (100% identity) | M.EcoXH987ORF1450P | |
| 1465 | tellurite/colicin resistance protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 11780 | BrnT family toxin | |||
| 11785 | R | EcosEC21MrrP (100% identity) | EcoXH987MrrP | |
| 11790 | type I restriction-modification system subunit | |||
| 12100 | glycosyltransferase | |||
| 12105 | R | EcosS3McrBP (100% identity) | EcoXH987McrBP | |
| 12110 | R | EcosS9McrCP (100% identity) | EcoXH987McrCP | |
| 12115 | Alw26I/Eco31I/Esp3I family type II restriction | |||