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Putative Citrobacter youngae CF10 RM systems
Ref: Huang,J. unpublished
REBASE ref # 24830
Sequence length: | GenBank #: | |
Chromosome: | 5,010,143 bp | CP102500 |
plasmid pCF10-C: | 80,740 bp | CP102503 |
plasmid pCF10-NDM: | 138,196 bp | CP102502 |
plasmid pCF10-tmexCD1: | 212,154 bp | CP102501 |
REBASE acronym: CyoCF10
Org_num: 61088
All begin NUG39_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
3395 | 615 aa hypothetical protein | |||
3400 | R | CfrM92ORF3620P (99% identity) | CyoCF10ORF3410P | |
3405 | S | S.CfrM92ORF3620P (99% identity) | S1.CyoCF10ORF3410P | |
3410 | M | M.CfrM92ORF3620P (100% identity) | M.CyoCF10ORF3410P | |
3415 | S | S2.Cfr2385ORF18115P (100% identity) | S2.CyoCF10ORF3410P | |
3420 | GTPase family protein | |||
6265 | restriction system-associated AAA family ATPase | |||
??? | S | S.KpnYI2ORF1234P (44% identity) | S2.CyoCF10ORF6285P | |
6280 | S | S.KpnYI2ORF1234P (29% identity) | S1.CyoCF10ORF6285P | |
6285 | M | M.KpnYI2ORF1234P (90% identity) | M.CyoCF10ORF6285P | |
6290 | integrase | |||
7785 | PD-(D/E)XK nuclease family protein | |||
7790 | R | EcoW12E19ORF23680P (99% identity) | CyoCF10ORF7795P | |
7795 | M | M.EcoW12E19ORF23680P (100% identity) | M.CyoCF10ORF7795P | |
7800 | S | S.Cfr181ORF24140P (100% identity) | S.CyoCF10ORF7795P | |
7805 | nuclease | |||
9775 | 388 aa hypothetical protein | |||
9780 | M | M.Csp0887ORF10835P (100% identity) | M.CyoCF10ORF9780P | |
9785 | S | S.Csp0887ORF10835P (100% identity) | S.CyoCF10ORF9780P | |
9790 | YecA family protein | |||
9795 | R | Cbr1b1ORF16305P (99% identity) | CyoCF10ORF9780P | |
9800 | M48 family metallopeptidase | |||
20825 | restriction endonuclease | |||
20830 | M | M.CpoSb2ORF12055P (99% identity) | M.CyoCF10ORF20830P | |
20835 | S | S.Sen10527ORF19005P (62% identity) | S.CyoCF10ORF20830P | |
20840 | R | Csp156IP (98% identity) | CyoCF10ORF20830P | |
20845 | endoribonuclease SymE | |||
plasmid pCF10-C | ||||
26005 | VOC family protein | |||
26010 | M | M.KpnKP120ORF22425P (100% identity) | M.CyoCF10ORF26010P | |
26015 | S | S.SenLG26II (18% identity) | S1.CyoCF10ORF26010P | |
26020 | 328 aa hypothetical protein | |||
26025 | ATP-dependent helicase | |||
26030 | 84 aa hypothetical protein | |||
26035 | type I restriction-modification system subunit M | |||
26040 | S | S.Kmi495ORF36630P (66% identity) | S2.CyoCF10ORF26010P | |
26045 | R | Kmi495ORF36630P (100% identity) | CyoCF10ORF26010P | |
26050 | ISL3-like element ISKpn25 family transposase | |||
plasmid pCF10-tmexCD1 | ||||
24845 | ISL3-like element ISSm4 family transposase | |||
24850 | R | Ecl93bORF4657P (100% identity) | CyoCF10ORF24865P | |
24855 | S | S.Ecl93bORF4657P (100% identity) | S2.CyoCF10ORF24865P | |
24860 | S | S1.AalK520ORF23360P (100% identity) | S1.CyoCF10ORF24865P | |
24865 | M | M.SmaY426ORF10P (100% identity) | M.CyoCF10ORF24865P | |
24870 | class 1 integron integrase IntI1 | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
1810 | cell division protein DamX | |||
1815 | M | M.Cyo1DamP (100% identity) | GATC | M.CyoCF10DamP |
1820 | ribulose-phosphate 3-epimerase | |||
2300 | DUF2556 family protein | |||
2305 | M | M.Cyo1ORFJP (95% identity) | ATGCAT | M.CyoCF10ORF2305P |
2310 | DNA-binding transcriptional regulator Fis | |||
6350 | 340 aa hypothetical protein | |||
6355 | M | M.Eco9067ORF1943P (97% identity) | M1.CyoCF10ORF6355P | |
6360 | M | M1.Cfr435ORFFP (97% identity) | M2.CyoCF10ORF6355P | |
6365 | RusA family crossover junction | |||
9475 | phosphohydrolase | |||
9480 | M | M.Cyo13709ORF1821P (97% identity) | CCWGG | M.CyoCF10ORF9480P |
9485 | V | V.Cyo1ORFGP (100% identity) | CCWGG | V.CyoCF10ORF9480P |
9490 | drug/metabolite exporter YedA | |||
14425 | RusA family crossover junction | |||
14430 | M | M.CfrCF51ORF6250P (84% identity) | M.CyoCF10ORF14430P | |
14435 | Ref family protein | |||
14810 | DUF4917 family protein | |||
14815 | M | M.Cfr691ORFBP (98% identity) | M.CyoCF10ORF14815P | |
14820 | 849 aa hypothetical protein | |||
plasmid pCF10-NDM | ||||
25805 | 73 aa hypothetical protein | |||
25810 | M | M.SmaQC11ORF52800P (100% identity) | M.CyoCF10ORF25810P | |
25815 | 56 aa hypothetical protein | |||
plasmid pCF10-tmexCD1 | ||||
25060 | DNA-binding protein | |||
25065 | M | M1.SenF8025ORFBP (100% identity) | M.CyoCF10ORF25065P | |
25070 | 273 aa hypothetical protein | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
3245 | inovirus Gp2 family protein | |||
3250 | R | Kqu2018ORF4320P (100% identity) | CyoCF10ORF3250P | |
3255 | 180 aa hypothetical protein | |||
plasmid pCF10-NDM | ||||
25670 | 132 aa hypothetical protein | |||
25675 | R | RorVR1ORF60280P (100% identity) | CyoCF10ORF25680P | |
25680 | M | M.RorVR1ORF60280P (100% identity) | M.CyoCF10ORF25680P | |
25685 | DEAD/DEAH box helicase | |||
Type IV | ||||
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
20815 | 130 aa hypothetical protein | |||
20820 | R | CfrR17McrBP (100% identity) | CyoCF10McrBP | |
20825 | R | Csp156McrCP (100% identity) | CyoCF10McrCP | |
20830 | type I restriction-modification system subunit |