Escherichia coli PK5 |
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Putative Escherichia coli PK5 RM systems
Ref: Lopez-Dorta,Y. et al. unpublished
REBASE ref # 35036
| Sequence length: | GenBank #: | |
| Chromosome: | 4,668,517 bp | CP074024 |
| plasmid pYLPK5a: | 49,405 bp | CP074025 |
REBASE acronym: EcoPK5
Org_num: 60948
All begin KFU66_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 11670 | M48 family metallopeptidase | |||
| 11675 | R | EcoNT1N28ORFEP (100% identity) | EcoPK5ORF11685P | |
| 11680 | S | S.EcoNT1N28ORFEP (100% identity) | S.EcoPK5ORF11685P | |
| 11685 | M | M.EcoNT1N28ORFEP (100% identity) | M.EcoPK5ORF11685P | |
| 11690 | helix-turn-helix transcriptional regulator | |||
| 19080 | adenine/cytosine-specific restriction | |||
| 19085 | R | EcoLH10b1ORF20565P (100% identity) | EcoPK5ORF19090P | |
| 19090 | M | M.EcoLH10b1ORF20565P (100% identity) | M.EcoPK5ORF19090P | |
| 19095 | S | S.EcoLH10b1ORF20565P (99% identity) | S.EcoPK5ORF19090P | |
| 19100 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1700 | cell division protein DamX | |||
| 1705 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoPK5DamP |
| 1710 | ribulose-phosphate 3-epimerase | |||
| 2335 | DUF2556 family protein | |||
| 2340 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.EcoPK5ORF2340P |
| 2345 | DNA-binding transcriptional regulator Fis | |||
| 7005 | recombination protein NinB | |||
| 7010 | M | M.Eal53106ORFJP (96% identity) | GATC | M.EcoPK5ORF7010P |
| 7015 | NinE family protein | |||
| 9170 | phosphohydrolase | |||
| 9175 | M | M.SspS13DcmP (100% identity) | CCWGG | M.EcoPK5DcmP |
| 9180 | V | V.SsoSE61DcmP (99% identity) | V.EcoPK5DcmP | |
| 9185 | drug/metabolite exporter YedA | |||
| plasmid pYLPK5a | ||||
| 22330 | IS1 family transposase | |||
| 22335 | M | M.SflSTLE4ORF22820P (100% identity) | CCWGG | M.EcoPK5ORF22335P |
| 22340 | R | EcoPK6ORF23325BP (100% identity) | CCWGG | EcoPK5ORF22335P |
| 22345 | IS1380-like element ISEc9 family transposase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19075 | GTPase | |||
| 19080 | R | SenHNK130MrrP (100% identity) | EcoPK5MrrP | |
| 19085 | type I restriction-modification system | |||