Clostridioides difficile DSM 104452 |
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Putative Clostridioides difficile DSM 104452 RM systems
Ref: Riedel,T. et al. unpublished
REBASE ref # 19234
Complete sequence: 4,167,361 bp
GenBank #: CP029345
REBASE acronym: Cdi104452
Org_num: 60604
All begin CDIF104452_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3340 | 56 aa hypothetical protein | |||
| 3341 | R | Pdi30ORF18845P (100% identity) | ATTYNNNNNCTTC | Cdi104452ORF3344P |
| 3342 | 423 aa hypothetical protein | |||
| 3343 | S | S.Pdi30ORF18845P (100% identity) | ATTYNNNNNCTTC | S.Cdi104452ORF3344P |
| 3344 | M | M.CdiS122ORF3110P (100% identity) | ATTYNNNNNCTTC | M.Cdi104452ORF3344P |
| 3345 | 115 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1084 | 58 aa hypothetical protein | |||
| 1085 | M | M.Pdi30ORF7740P (100% identity) | M.Cdi104452ORF1085P | |
| 1086 | 73 aa hypothetical protein | |||
| 2966 | phospholipase | |||
| 2967 | M | M.PdiZ31ORF1541P (100% identity) | CAAAAA | M.Cdi104452ORF2967P |
| 2968 | badm/rrf2 family transcriptional regulator | |||
| 3305 | 33 aa hypothetical protein | |||
| 3306 | M | M.Pdi6602ORF710333P (100% identity) | GCNGC | M.Cdi104452ORF3306P |
| 3307 | 872 aa hypothetical protein | |||
| 3321 | Restriction endonuclease PvuII | |||
| 3322 | M | M1.Pdi30ORF18765P (100% identity) | CATCG | M1.Cdi104452ORF3322P |
| 3323 | M | M2.CdiS122ORF3010P (100% identity) | CATCG | M2.Cdi104452ORF3322P |
| 3324 | site-specific recombinase, DNA invertase Pin | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2223 | sigma-54-dependent transcriptional regulator | |||
| 2224 | R | Pdi30McrCP (100% identity) | Cdi104452McrCP | |
| 2225 | R | Pdi30McrBP (100% identity) | Cdi104452McrBP | |
| 2226 | cell division protein FtsZ | |||