Escherichia coli EC21Z-078 |
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Putative Escherichia coli EC21Z-078 RM systems
Ref: Ma,J. et al. unpublished
REBASE ref # 34908
| Sequence length: | GenBank #: | |
| Chromosome: | 4,683,589 bp | CP101257 |
| plasmid pEC21Z078-80K: | 80,388 bp | CP101260 |
| plasmid pEC21Z078-85K: | 85,299 bp | CP101259 |
REBASE acronym: EcoZ078
Org_num: 60385
All begin NML20_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5595 | IS1 family transposase | |||
| 5600 | R | Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | EcoZ078ORF5610P |
| 5605 | S | S.Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | S.EcoZ078ORF5610P |
| 5610 | M | M.SenS688ORF13495P (100% identity) | ACAYNNNNCTG | M.EcoZ078ORF5610P |
| 5615 | integrase core domain-containing protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2435 | DUF2556 family protein | |||
| 2440 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.EcoZ078ORF2440P |
| 2445 | DNA-binding transcriptional regulator Fis | |||
| 8800 | phosphohydrolase | |||
| 8805 | M | M.EcosEC5DcmP (100% identity) | CCWGG | M.EcoZ078DcmP |
| 8810 | V | V.EcosEC7DcmP (100% identity) | CCWGG | V.EcoZ078DcmP |
| 8815 | drug/metabolite exporter YedA | |||
| 12285 | 39 aa hypothetical protein | |||
| 12305 | M | M.EcoZ101ORF12285P (100% identity) | A | M.EcoZ078ORF12305P |
| 12310 | TrmB family transcriptional regulator | |||
| 17620 | phage lysis protein EssD | |||
| 17625 | M | M.Sso63633ORF22290P (100% identity) | M.EcoZ078ORF17625P | |
| 17630 | TrmB family transcriptional regulator | |||
| 17665 | LexA family transcriptional regulator | |||
| 17670 | M | M.EcoZ1836ORF22690P (100% identity) | GATC | M.EcoZ078ORF17670P |
| 17675 | PerC family transcriptional regulator | |||
| plasmid pEC21Z078-80K | ||||
| 24410 | TerB family tellurite resistance protein | |||
| 24425 | M | M.EcoZ101ORF23625P (100% identity) | M.EcoZ078ORF24425P | |
| 24430 | recombination-associated protein RdgC | |||
| plasmid pEC21Z078-85K | ||||
| 23615 | 103 aa hypothetical protein | |||
| 23620 | M | M.Sso2ORF26005P (100% identity) | M.EcoZ078ORF23620P | |
| 23625 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 12965 | isocitrate/isopropylmalate family dehydrogenase | |||
| 12970 | R | EcosEC27McrCP (100% identity) | EcoZ078McrCP | |
| 12975 | R | EcoteDMcrBP (100% identity) | EcoZ078McrBP | |
| 12980 | recombinase family protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 14550 | replication endonuclease | |||
| 14555 | M | M.Sen663ORF16605P (100% identity) | GATC | M.EcoZ078ORF14555P |
| 14560 | TraR/DksA family transcriptional regulator | |||