Salmonella enterica subsp. enterica serovar Typhimurium R18.0409 |
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Putative Salmonella enterica subsp. enterica serovar Typhimurium R18.0409 RM systems
Ref: Chiou,C.S. et al. unpublished
REBASE ref # 34932
| Sequence length: | GenBank #: | |
| Chromosome: | 4,962,789 bp | CP100707 |
| plasmid pR18.0409_279k: | 278,879 bp | CP100708 |
| plasmid pR18.0409_97k: | 97,209 bp | CP100709 |
REBASE acronym: Sen0409
Org_num: 60509
All begin NL735_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20160 | restriction endonuclease | |||
| 20165 | R | StyUK1IIP (100% identity) | GAGNNNNNNRTAYG | Sen0409ORF20170P |
| 20170 | M | M.StyLTIII (100% identity) | GAGNNNNNNRTAYG | M.Sen0409ORF20170P |
| 20175 | S | S.StyUK1II (100% identity) | GAGNNNNNNRTAYG | S.Sen0409ORF20170P |
| 20180 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1815 | cell division protein DamX | |||
| 1820 | M | M.StyTDamP (100% identity) | GATC | M.Sen0409DamP |
| 1825 | ribulose-phosphate 3-epimerase | |||
| 2310 | DUF2556 family protein | |||
| 2315 | M | M.StyUK1III (100% identity) | ATGCAT | M.Sen0409ORF2315P |
| 2320 | DNA-binding transcriptional regulator Fis | |||
| 3230 | DUF2732 domain-containing protein | |||
| 3235 | M | M.SensSZL38ORF19965P (100% identity) | GATC | M.Sen0409ORF3235P |
| 3240 | replication endonuclease | |||
| 5585 | IS6-like element IS26 family transposase | |||
| 5590 | M | M.StyCORF187P (49% identity) | M.Sen0409ORF5590P | |
| 5595 | thermonuclease family protein | |||
| 6190 | Com family DNA-binding transcriptional | |||
| 6195 | M | M.SenYU39ORF1896P (100% identity) | M.Sen0409ORF6195P | |
| 6200 | ribosome-associated translation inhibitor RaiA | |||
| 9445 | PerC family transcriptional regulator | |||
| 9450 | M | M.Ssp17155ORFIP (100% identity) | GATC | M.Sen0409ORF9450P |
| 9455 | RusA family crossover junction | |||
| 20320 | BREX system P-loop protein BrxC | |||
| 20325 | RM | StyUK1IV (100% identity) | GATCAG | Sen0409ORF20325P |
| 20330 | AAA family ATPase | |||
| 22240 | LexA family transcriptional regulator | |||
| 22245 | M | M.SflLIN17ORF20615P (100% identity) | GATC | M.Sen0409ORF22245P |
| 22250 | PerC family transcriptional regulator | |||
| plasmid pR18.0409_279k | ||||
| 25035 | 55 aa hypothetical protein | |||
| 25040 | M | M.YpsF1ORFCP (100% identity) | CCWGG | M.Sen0409ORF25040P |
| 25045 | thermonuclease family protein | |||
| 25435 | 202 aa hypothetical protein | |||
| 25440 | M | M.YpsF1ORFBP (100% identity) | M.Sen0409ORF25440P | |
| 25445 | 48 aa hypothetical protein | |||
| 25815 | DNA-binding protein | |||
| 25820 | M | M.SenBL10ORFDP (100% identity) | M.Sen0409ORF25820P | |
| 25825 | 277 aa hypothetical protein | |||
| plasmid pR18.0409_97k | ||||
| 26265 | 73 aa hypothetical protein | |||
| 26270 | M | M.SspPIBORF23080P (100% identity) | M.Sen0409ORF26270P | |
| 26275 | 103 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 17855 | small effector SsaA | |||
| 17860 | R | StyUK1IP (99% identity) | CAGAG | Sen0409ORF17865P |
| 17865 | M | M.StyUK1I (100% identity) | CAGAG | M.Sen0409ORF17865P |
| 17870 | MFS transporter | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20155 | BrnT family toxin | |||
| 20160 | R | StyUK1MrrP (100% identity) | Sen0409MrrP | |
| 20165 | type I restriction-modification system | |||